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针对结核分枝杆菌必需细胞壁脂酶 Rv3802c 进行潜在的治疗靶点研究。

Targeting essential cell wall lipase Rv3802c for potential therapeutics against tuberculosis.

机构信息

Department of Biotechnology, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India.

出版信息

J Mol Graph Model. 2012 Sep;38:235-42. doi: 10.1016/j.jmgm.2012.06.016. Epub 2012 Aug 4.

Abstract

Cell wall and lipid metabolism plays a vital role in the survival and infection of Mycobacterium tuberculosis. Increase in the incidences of life-threatening multidrug-resistant (MDR) and extreme drug-resistant (XDR) tuberculosis worsens the existing scenario and urge the need of new druggable targets and new drugs. Targeting Rv3802c, an essential cell wall lipase, can open up a new arsenal to fight the dreadful opportunistic pathogen. Our current study highlights the essentiality of Rv3802c. Its 3D structure is predicted for the first time which provides insight in identifying the ligand binding sites. Our analysis showed Rv3802c is highly conserved throughout mycobacterial species with no significant sequence homolog found in human proteome. Virtual screening followed by comparative docking studies of Rv3802c with its closest human structural homolog has been carried out to identify potential inhibitors effective towards mycobacterial proteins. Two diverse molecules from ZINC database, ZINC26726377 and ZINC43866786 have been identified as potential inhibitors effective towards Rv3802c based on the difference in predicted binding free energy of -3.99 and -3.28kcal/mol respectively. Rv3802c is a promising drug target and also a step towards understanding and targeting the pathogen's cell wall and lipid metabolism simultaneously to combat tuberculosis.

摘要

细胞壁和脂质代谢在结核分枝杆菌的存活和感染中起着至关重要的作用。危及生命的耐多药(MDR)和广泛耐药(XDR)结核病发病率的增加使现有情况恶化,并迫切需要新的可成药靶点和新药。针对 Rv3802c,一种必需的细胞壁脂酶,可以开辟新的武器来对抗可怕的机会性病原体。我们目前的研究强调了 Rv3802c 的必要性。首次预测了其 3D 结构,为识别配体结合位点提供了深入了解。我们的分析表明,Rv3802c 在整个分枝杆菌物种中高度保守,在人类蛋白质组中没有发现明显的序列同源物。进行了虚拟筛选,然后对 Rv3802c 与其最接近的人类结构同源物进行了比较对接研究,以鉴定对分枝杆菌蛋白有效的潜在抑制剂。从 ZINC 数据库中鉴定出两种来自 ZINC26726377 和 ZINC43866786 的不同分子,它们是有效的 Rv3802c 潜在抑制剂,基于预测的结合自由能的差异分别为-3.99 和-3.28kcal/mol。Rv3802c 是一个有前途的药物靶点,也是同时理解和靶向病原体细胞壁和脂质代谢以对抗结核病的一步。

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