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奥加托菌属新种——来自泰国叶际的两种新型甲基营养酵母,坎查纳布利ensis 种和旺东ensis 种。

Ogataea kanchanaburiensis sp. nov. and Ogataea wangdongensis sp. nov., two novel methylotrophic yeast species from phylloplane in Thailand.

机构信息

Department of Microbiology, Faculty of Science, Kasetsart University, Bangkok, 10900, Thailand.

出版信息

Antonie Van Leeuwenhoek. 2013 Mar;103(3):551-8. doi: 10.1007/s10482-012-9837-5. Epub 2012 Oct 27.

Abstract

Three strains (KM03(T), KM13 (T) and KM15) representing two novel methylotrophic yeast species were isolated from the external surface of plant leaves, which were collected from Kanchanaburi province, Thailand, by three-consecutive enrichments in methanol broth. Strain KM03(T) was isolated from phylloplane of a mango tree (Mangifera indica) and two strains, KM13(T) and KM15, were obtained from phylloplane of different wine grapes (Vitis vinifera). The sequences of the D1/D2 region of the large subunit (LSU) rRNA gene of the two strains (KM13(T) and KM15) were identical and differed markedly from that of strain KM03(T). In terms of pairwise sequence similarity of the D1/D2 region the closest species to the strains KM13(T) and KM15 were Candida suzukii (CBS 9253(T)) and Candida nitratophila (CBS 2027(T)) but with 2.1 % nucleotide substitutions. Strain KM03(T) differed from Ogataea wickerhamii (CBS 4307(T)), its closest relative, by 2.3 % nucleotide substitutions. Phylogenetic analysis based on the D1/D2 sequences placed the three strains in the Ogataea clade. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics, the sequence analyses of the D1/D2 and the internal transcribed spacer (ITS) regions of the nuclear ribosomal RNA gene (nrRNA) operon, the three strains represent two novel Ogataea species although formation of ascospores was not observed. Ogataea kanchanaburiensis sp. nov. is proposed for strain KM03(T) (=BCC 47626(T) = NBRC 108603(T) = CBS 12673(T)). Two strains, KM13(T) and KM15, were assigned to Ogataea wangdongensis sp. nov. (type strain KM13(T) = BCC 42664(T) = NBRC 107778(T) = CBS 12674(T)). GenBank/EMBL/DDBJ accession numbers for the sequences of the D1/D2 and the ITS regions of O. kanchanaburiensis KM03(T) are AB734090 and AB734093, respectively, of O. wangdongensis KM13(T) are AB734091 and AB734094, respectively, and of O. wangdongensis KM15 are AB734092 and AB734095, respectively.

摘要

三株(KM03(T)、KM13 (T) 和 KM15)代表了两种新型的甲醇营养酵母种,从泰国堪察布省植物叶片的外表面分离出来,通过甲醇肉汤的三次连续富集获得。KM03(T) 株从芒果树(Mangifera indica)的叶面上分离出来,而另外两株 KM13(T) 和 KM15 则从不同的酿酒葡萄(Vitis vinifera)的叶面上获得。这两株(KM13(T) 和 KM15)的大亚基(LSU)rRNA 基因的 D1/D2 区序列完全相同,与 KM03(T) 株的序列有显著差异。根据 D1/D2 区序列的成对相似性,与 KM13(T) 和 KM15 株最接近的种是铃木酵母(Candida suzukii)(CBS 9253(T))和硝酸营养酵母(Candida nitratophila)(CBS 2027(T)),但核苷酸替换率为 2.1%。KM03(T) 株与最接近的亲缘种 Ogataea wickerhamii(CBS 4307(T))的核苷酸替换率为 2.3%。基于 D1/D2 序列的系统发育分析将三株菌归入 Ogataea 分支。基于形态学、生物化学、生理学和化学分类学特征,D1/D2 序列和核核糖体 RNA 基因(nrRNA)操纵子的内部转录间隔区(ITS)序列的分析表明,这三株菌代表了两种新型的 Ogataea 种,尽管没有观察到形成子囊孢子。因此提出了新的 Ogataea kanchanaburiensis 种(KM03(T)株=BCC 47626(T)=NBRC 108603(T)=CBS 12673(T))。KM13(T) 和 KM15 两株菌被归入 Wangdongensis 种(KM13(T)株=BCC 42664(T)=NBRC 107778(T)=CBS 12674(T))。Ogataea kanchanaburiensis KM03(T) 的 D1/D2 和 ITS 区序列的 GenBank/EMBL/DDBJ 注册号分别为 AB734090 和 AB734093,Ogataea wangdongensis KM13(T) 的分别为 AB734091 和 AB734094,而 Ogataea wangdongensis KM15 的分别为 AB734092 和 AB734095。

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