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液体中原子过程与流体动力学过程的并发多尺度建模。

Concurrent multiscale modelling of atomistic and hydrodynamic processes in liquids.

作者信息

Markesteijn Anton, Karabasov Sergey, Scukins Arturs, Nerukh Dmitry, Glotov Vyacheslav, Goloviznin Vasily

机构信息

Department of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, UK.

Department of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London E1 4NS, UK

出版信息

Philos Trans A Math Phys Eng Sci. 2014 Aug 6;372(2021). doi: 10.1098/rsta.2013.0379.

Abstract

Fluctuations of liquids at the scales where the hydrodynamic and atomistic descriptions overlap are considered. The importance of these fluctuations for atomistic motions is discussed and examples of their accurate modelling with a multi-space-time-scale fluctuating hydrodynamics scheme are provided. To resolve microscopic details of liquid systems, including biomolecular solutions, together with macroscopic fluctuations in space-time, a novel hybrid atomistic-fluctuating hydrodynamics approach is introduced. For a smooth transition between the atomistic and continuum representations, an analogy with two-phase hydrodynamics is used that leads to a strict preservation of macroscopic mass and momentum conservation laws. Examples of numerical implementation of the new hybrid approach for the multiscale simulation of liquid argon in equilibrium conditions are provided.

摘要

考虑了在流体动力学和原子描述重叠尺度下液体的涨落。讨论了这些涨落对原子运动的重要性,并提供了使用多时空尺度涨落流体动力学方案对其进行精确建模的示例。为了解决液体系统(包括生物分子溶液)的微观细节以及时空的宏观涨落,引入了一种新颖的混合原子-涨落流体动力学方法。为了在原子表示和连续介质表示之间实现平滑过渡,使用了与两相流体动力学的类比,这导致严格保留宏观质量和动量守恒定律。提供了新混合方法在平衡条件下对液态氩进行多尺度模拟的数值实现示例。

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本文引用的文献

1
Water-Peptide Dynamics during Conformational Transitions.
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2
Mixing atoms and coarse-grained beads in modelling polymer melts.
J Chem Phys. 2012 Oct 28;137(16):164111. doi: 10.1063/1.4759504.
3
Adaptive resolution molecular dynamics simulation through coupling to an internal particle reservoir.
Phys Rev Lett. 2012 Apr 27;108(17):170602. doi: 10.1103/PhysRevLett.108.170602.
4
Understanding jet noise.
Philos Trans A Math Phys Eng Sci. 2010 Aug 13;368(1924):3593-608. doi: 10.1098/rsta.2010.0086.
7
Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids.
J Chem Phys. 2009 Apr 7;130(13):134111. doi: 10.1063/1.3106717.
8
A unified model of protein dynamics.
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5129-34. doi: 10.1073/pnas.0900336106. Epub 2009 Feb 27.
9
Fluctuating hydrodynamic modeling of fluids at the nanoscale.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 2):026307. doi: 10.1103/PhysRevE.75.026307. Epub 2007 Feb 8.
10
Multiscale modeling of liquids with molecular specificity.
Phys Rev Lett. 2006 Sep 29;97(13):134501. doi: 10.1103/PhysRevLett.97.134501. Epub 2006 Sep 25.

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