Suppr超能文献

海洋细菌食半乳聚糖佐贝氏菌的甘露醇利用系统。

The mannitol utilization system of the marine bacterium Zobellia galactanivorans.

作者信息

Groisillier Agnès, Labourel Aurore, Michel Gurvan, Tonon Thierry

机构信息

Sorbonne Universités, UPMC Université Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France; CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France.

Sorbonne Universités, UPMC Université Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France; CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Roscoff, France

出版信息

Appl Environ Microbiol. 2015 Mar;81(5):1799-812. doi: 10.1128/AEM.02808-14. Epub 2014 Dec 29.

Abstract

Mannitol is a polyol that occurs in a wide range of living organisms, where it fulfills different physiological roles. In particular, mannitol can account for as much as 20 to 30% of the dry weight of brown algae and is likely to be an important source of carbon for marine heterotrophic bacteria. Zobellia galactanivorans (Flavobacteriia) is a model for the study of pathways involved in the degradation of seaweed carbohydrates. Annotation of its genome revealed the presence of genes potentially involved in mannitol catabolism, and we describe here the biochemical characterization of a recombinant mannitol-2-dehydrogenase (M2DH) and a fructokinase (FK). Among the observations, the M2DH of Z. galactanivorans was active as a monomer, did not require metal ions for catalysis, and featured a narrow substrate specificity. The FK characterized was active on fructose and mannose in the presence of a monocation, preferentially K(+). Furthermore, the genes coding for these two proteins were adjacent in the genome and were located directly downstream of three loci likely to encode an ATP binding cassette (ABC) transporter complex, suggesting organization into an operon. Gene expression analysis supported this hypothesis and showed the induction of these five genes after culture of Z. galactanivorans in the presence of mannitol as the sole source of carbon. This operon for mannitol catabolism was identified in only 6 genomes of Flavobacteriaceae among the 76 publicly available at the time of the analysis. It is not conserved in all Bacteroidetes; some species contain a predicted mannitol permease instead of a putative ABC transporter complex upstream of M2DH and FK ortholog genes.

摘要

甘露醇是一种多元醇,存在于多种生物体内,在其中发挥着不同的生理作用。特别是,甘露醇在褐藻干重中所占比例可达20%至30%,很可能是海洋异养细菌的重要碳源。食半乳糖海杆菌(黄杆菌纲)是研究海藻碳水化合物降解途径的模型。对其基因组的注释揭示了可能参与甘露醇分解代谢的基因的存在,我们在此描述了一种重组甘露醇-2-脱氢酶(M2DH)和一种果糖激酶(FK)的生化特性。在这些观察结果中,食半乳糖海杆菌的M2DH作为单体具有活性,催化过程不需要金属离子,且底物特异性较窄。所鉴定的FK在存在单价阳离子(优先为K(+))的情况下对果糖和甘露糖具有活性。此外,编码这两种蛋白质的基因在基因组中相邻,且直接位于可能编码ATP结合盒(ABC)转运体复合物的三个基因座的下游,表明它们组成了一个操纵子。基因表达分析支持了这一假设,并表明在以甘露醇作为唯一碳源培养食半乳糖海杆菌后,这五个基因被诱导表达。在分析时公开的76个黄杆菌科基因组中,仅在6个基因组中鉴定出了这个甘露醇分解代谢操纵子。它在所有拟杆菌门中并不保守;一些物种在M2DH和FK直系同源基因上游含有预测的甘露醇通透酶,而非假定的ABC转运体复合物。

相似文献

1
The mannitol utilization system of the marine bacterium Zobellia galactanivorans.
Appl Environ Microbiol. 2015 Mar;81(5):1799-812. doi: 10.1128/AEM.02808-14. Epub 2014 Dec 29.
4
The laterally acquired GH5 EngA from the marine bacterium is dedicated to hemicellulose hydrolysis.
Biochem J. 2018 Nov 28;475(22):3609-3628. doi: 10.1042/BCJ20180486.
5
Mannitol as a Growth Substrate for Facultative Methylotroph Methylobrevis pamukkalensis PK2.
Curr Microbiol. 2024 Aug 7;81(9):300. doi: 10.1007/s00284-024-03795-6.
8
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Nat Commun. 2017 Nov 22;8(1):1685. doi: 10.1038/s41467-017-01832-6.
10
Structural and biochemical characterization of the laminarinase ZgLamCGH16 from Zobellia galactanivorans suggests preferred recognition of branched laminarin.
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):173-84. doi: 10.1107/S139900471402450X. Epub 2015 Jan 23.

引用本文的文献

1
and are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish .
ISME Commun. 2024 Aug 1;4(1):ycae102. doi: 10.1093/ismeco/ycae102. eCollection 2024 Jan.
2
Mannitol as a Growth Substrate for Facultative Methylotroph Methylobrevis pamukkalensis PK2.
Curr Microbiol. 2024 Aug 7;81(9):300. doi: 10.1007/s00284-024-03795-6.
4
6
The microbiome: Effects of region, season, and physiology.
Front Microbiol. 2023 Jan 6;13:1050939. doi: 10.3389/fmicb.2022.1050939. eCollection 2022.
7
Influence of the Carbon and Nitrogen Sources on Diabolican Production by the Marine Strain CNCM I-1629.
Polymers (Basel). 2022 May 13;14(10):1994. doi: 10.3390/polym14101994.

本文引用的文献

2
Structural and biochemical characterization of the laminarinase ZgLamCGH16 from Zobellia galactanivorans suggests preferred recognition of branched laminarin.
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):173-84. doi: 10.1107/S139900471402450X. Epub 2015 Jan 23.
5
Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade.
Appl Environ Microbiol. 2014 Aug;80(15):4725-37. doi: 10.1128/AEM.00719-14.
7
8
Opportunities and challenges for seaweed in the biobased economy.
Trends Biotechnol. 2014 May;32(5):231-3. doi: 10.1016/j.tibtech.2014.02.007.
9
Draft Genome Sequence of Cytophaga fermentans JCM 21142T, a Facultative Anaerobe Isolated from Marine Mud.
Genome Announc. 2014 Mar 27;2(2):e00206-14. doi: 10.1128/genomeA.00206-14.
10
Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications.
Appl Microbiol Biotechnol. 2014 Apr;98(7):2917-35. doi: 10.1007/s00253-014-5557-2. Epub 2014 Feb 22.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验