一株来自新西兰朗伊波的结核分枝杆菌菌株的基因组序列草图
Draft Genome Sequence of a New Zealand Rangipo Strain of Mycobacterium tuberculosis.
作者信息
Mac Aogáin Micheál, Gautam Sanjay S, Bower James E, Basu Indira, O'Toole Ronan F
机构信息
Department of Clinical Microbiology, School of Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Breathe Well Centre, School of Medicine, University of Tasmania, Hobart, Australia.
出版信息
Genome Announc. 2016 Jul 7;4(4):e00657-16. doi: 10.1128/genomeA.00657-16.
Abstract
The Rangipo genotype of the Mycobacterium tuberculosis complex has been associated with a number of tuberculosis (TB) outbreaks in New Zealand. We report here the draft whole-genome sequence of a representative isolate of this strain.
摘要
结核分枝杆菌复合群的兰伊波基因型与新西兰的多起结核病（TB）暴发有关。我们在此报告该菌株一个代表性分离株的全基因组序列草图。
相似文献
1
Draft Genome Sequence of a New Zealand Rangipo Strain of Mycobacterium tuberculosis.
Genome Announc. 2016 Jul 7;4(4):e00657-16. doi: 10.1128/genomeA.00657-16.
2
Differential carriage of virulence-associated loci in the New Zealand Rangipo outbreak strain of Mycobacterium tuberculosis.
Infect Dis (Lond). 2017 Sep;49(9):680-688. doi: 10.1080/23744235.2017.1330553. Epub 2017 May 23.
3
Rapid molecular diagnosis of the Mycobacterium tuberculosis Rangipo strain responsible for the largest recurring TB cluster in New Zealand.
Diagn Microbiol Infect Dis. 2017 Jun;88(2):138-140. doi: 10.1016/j.diagmicrobio.2017.03.012. Epub 2017 Mar 23.
4
Draft Genome Sequence of a Multidrug-Resistant New Zealand Isolate of Mycobacterium tuberculosis Lineage 3.
Genome Announc. 2014 Oct 16;2(5):e01017-14. doi: 10.1128/genomeA.01017-14.
5
Draft Genome Sequence of the First Isolate of Extensively Drug-Resistant Mycobacterium tuberculosis in New Zealand.
Genome Announc. 2014 May 8;2(3):e00319-14. doi: 10.1128/genomeA.00319-14.
6
Draft Genome Sequence of a Drug-Susceptible New Zealand Isolate of Mycobacterium tuberculosis Lineage 3.
Genome Announc. 2015 May 21;3(3):e00499-15. doi: 10.1128/genomeA.00499-15.
7
Evaluation of the rapid molecular diagnostic test for the New Zealand Mycobacterium tuberculosis Rangipo strain in a clinical setting.
N Z Med J. 2018 Jul 13;131(1478):70-72.
8
A community and workplace outbreak of tuberculosis in Hawke's Bay in 2002.
N Z Med J. 2004 Aug 20;117(1200):U1019.
9
Whole genome analysis of an MDR Beijing/W strain of Mycobacterium tuberculosis with large genomic deletions associated with resistance to isoniazid.
Gene. 2016 May 15;582(2):128-36. doi: 10.1016/j.gene.2016.02.003. Epub 2016 Feb 4.
10
Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand.
PeerJ. 2016 Apr 12;4:e1905. doi: 10.7717/peerj.1905. eCollection 2016.
引用本文的文献
1
Dispersal of Driven by Historical European Trade in the South Pacific.
Front Microbiol. 2019 Dec 4;10:2778. doi: 10.3389/fmicb.2019.02778. eCollection 2019.
2
Molecular epidemiology of tuberculosis in Tasmania and genomic characterisation of its first known multi-drug resistant case.
PLoS One. 2018 Feb 21;13(2):e0192351. doi: 10.1371/journal.pone.0192351. eCollection 2018.
本文引用的文献
1
PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data.
J Clin Microbiol. 2015 Jun;53(6):1908-14. doi: 10.1128/JCM.00025-15. Epub 2015 Apr 8.
2
Phylogenetic lineages of tuberculosis isolates in New Zealand and their association with patient demographics.
Int J Tuberc Lung Dis. 2013 Jul;17(7):892-7. doi: 10.5588/ijtld.12.0795. Epub 2013 Apr 30.
3
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Fly (Austin). 2012 Apr-Jun;6(2):80-92. doi: 10.4161/fly.19695.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
6
The Sequence Alignment/Map format and SAMtools.
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
7
A community and workplace outbreak of tuberculosis in Hawke's Bay in 2002.
N Z Med J. 2004 Aug 20;117(1200):U1019.
Zotero 插件