Suppr超能文献

作为DNA甲基化的读取器和效应器的转录因子。

Transcription factors as readers and effectors of DNA methylation.

作者信息

Zhu Heng, Wang Guohua, Qian Jiang

机构信息

Department of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Edward Miller Research Building, 733 North Broadway, Baltimore, Maryland 21205, USA.

The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins School of Medicine, Baltimore, Maryland 21287, USA.

出版信息

Nat Rev Genet. 2016 Aug 1;17(9):551-65. doi: 10.1038/nrg.2016.83.

Abstract

Recent technological advances have made it possible to decode DNA methylomes at single-base-pair resolution under various physiological conditions. Many aberrant or differentially methylated sites have been discovered, but the mechanisms by which changes in DNA methylation lead to observed phenotypes, such as cancer, remain elusive. The classical view of methylation-mediated protein-DNA interactions is that only proteins with a methyl-CpG binding domain (MBD) can interact with methylated DNA. However, evidence is emerging to suggest that transcription factors lacking a MBD can also interact with methylated DNA. The identification of these proteins and the elucidation of their characteristics and the biological consequences of methylation-dependent transcription factor-DNA interactions are important stepping stones towards a mechanistic understanding of methylation-mediated biological processes, which have crucial implications for human development and disease.

摘要

最近的技术进步使得在各种生理条件下以单碱基对分辨率解码DNA甲基化组成为可能。已经发现了许多异常或差异甲基化位点,但DNA甲基化变化导致诸如癌症等观察到的表型的机制仍然难以捉摸。甲基化介导的蛋白质-DNA相互作用的传统观点是,只有具有甲基化CpG结合域(MBD)的蛋白质才能与甲基化DNA相互作用。然而,越来越多的证据表明,缺乏MBD的转录因子也能与甲基化DNA相互作用。鉴定这些蛋白质并阐明它们的特征以及甲基化依赖性转录因子-DNA相互作用的生物学后果,是朝着从机制上理解甲基化介导的生物学过程迈出的重要一步,而这对人类发育和疾病具有至关重要的意义。

相似文献

1
Transcription factors as readers and effectors of DNA methylation.
Nat Rev Genet. 2016 Aug 1;17(9):551-65. doi: 10.1038/nrg.2016.83.
2
Effect of CpG methylation on DNA binding protein: molecular dynamics simulations of the homeodomain PITX2 bound to the methylated DNA.
J Mol Graph Model. 2011 Jun;29(7):920-7. doi: 10.1016/j.jmgm.2011.03.003. Epub 2011 Mar 10.
3
On how mammalian transcription factors recognize methylated DNA.
Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
5
Towards an understanding of DNA recognition by the methyl-CpG binding domain 1.
J Biomol Struct Dyn. 2005 Jun;22(6):695-706. doi: 10.1080/07391102.2005.10507036.
6
Methyl-CpG-binding domain proteins: readers of the epigenome.
Epigenomics. 2015;7(6):1051-73. doi: 10.2217/epi.15.39. Epub 2015 Apr 30.
7
An epigenetic regulator: methyl-CpG-binding domain protein 1 (MBD1).
Int J Mol Sci. 2015 Mar 5;16(3):5125-40. doi: 10.3390/ijms16035125.
8
Methyl CpG-binding proteins and transcriptional repression.
Bioessays. 2001 Dec;23(12):1131-7. doi: 10.1002/bies.10008.
9
The methyl-CpG binding domain and the evolving role of DNA methylation in animals.
Trends Genet. 2003 May;19(5):269-77. doi: 10.1016/S0168-9525(03)00080-5.
10
Molecular dynamics study of the recognition of dimethylated CpG sites by MBD1 protein.
J Chem Inf Model. 2015 Mar 23;55(3):636-44. doi: 10.1021/ci500657d. Epub 2015 Feb 18.

引用本文的文献

1
The role of circadian rhythm-related genes in type 2 diabetes from a multi-omics perspective.
J Glob Health. 2025 Aug 29;15:04227. doi: 10.7189/jogh.15.04227.
2
The epigenetic circle: feedback loops in the maintenance of cellular memory.
Epigenetics Chromatin. 2025 Aug 20;18(1):56. doi: 10.1186/s13072-025-00621-6.
3
Transcriptional regulation as a dose-dependent process: insights from transcription factor tuning.
Open Biol. 2025 Aug;15(8):240328. doi: 10.1098/rsob.240328. Epub 2025 Aug 6.
4
Unveiling Epigenetic Regulatory Elements Associated with Breast Cancer Development.
Int J Mol Sci. 2025 Jul 8;26(14):6558. doi: 10.3390/ijms26146558.
6
DNA methylation and hydroxymethylation dynamics in the aging brain and its impact on ischemic stroke.
Neurochem Int. 2025 Sep;188:106007. doi: 10.1016/j.neuint.2025.106007. Epub 2025 Jun 11.
7
Molecular Insights into Neurological Regression with a Focus on Rett Syndrome-A Narrative Review.
Int J Mol Sci. 2025 Jun 3;26(11):5361. doi: 10.3390/ijms26115361.
8
Type-2 diabetes epigenetic biomarkers: present status and future directions for global and Indigenous health.
Front Mol Biosci. 2025 Apr 28;12:1502640. doi: 10.3389/fmolb.2025.1502640. eCollection 2025.
9
A plant virus differentially alters DNA methylation in two cryptic species of a hemipteran vector.
Npj Viruses. 2024 Aug 12;2(1):35. doi: 10.1038/s44298-024-00044-2.
10
Transcription factor occupancy limits DNA methylation and determines ICAM1 expression in breast cancer.
Acta Biochim Biophys Sin (Shanghai). 2025 Jan 8;57(5):818-833. doi: 10.3724/abbs.2024237.

本文引用的文献

2
Insulator dysfunction and oncogene activation in IDH mutant gliomas.
Nature. 2016 Jan 7;529(7584):110-4. doi: 10.1038/nature16490. Epub 2015 Dec 23.
3
Competition between DNA methylation and transcription factors determines binding of NRF1.
Nature. 2015 Dec 24;528(7583):575-9. doi: 10.1038/nature16462. Epub 2015 Dec 16.
4
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale.
Nat Methods. 2015 Nov;12(11):1047-50. doi: 10.1038/nmeth.3569. Epub 2015 Sep 7.
5
Role of DNA Methylation in Modulating Transcription Factor Occupancy.
Cell Rep. 2015 Aug 18;12(7):1184-95. doi: 10.1016/j.celrep.2015.07.024. Epub 2015 Aug 6.
6
Human body epigenome maps reveal noncanonical DNA methylation variation.
Nature. 2015 Jul 9;523(7559):212-6. doi: 10.1038/nature14465. Epub 2015 Jun 1.
8
Kaiso mainly locates in the nucleus in vivo and binds to methylated, but not hydroxymethylated DNA.
Chin J Cancer Res. 2015 Apr;27(2):148-55. doi: 10.3978/j.issn.1000-9604.2015.04.03.
9
Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.
Cell. 2015 Apr 23;161(3):555-568. doi: 10.1016/j.cell.2015.03.017. Epub 2015 Apr 16.
10
Disruption of DNA-methylation-dependent long gene repression in Rett syndrome.
Nature. 2015 Jun 4;522(7554):89-93. doi: 10.1038/nature14319. Epub 2015 Mar 11.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验