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轴突退化基因SARM1在进化上与其他含TIR结构域的蛋白质不同。

The axon degeneration gene SARM1 is evolutionarily distinct from other TIR domain-containing proteins.

作者信息

Malapati Harsha, Millen Spencer M, J Buchser William

机构信息

Department of Biology, College of William & Mary, 540 Landrum Dr., Williamsburg, VA, USA.

Neuroscience Program, College of William & Mary, Williamsburg, VA, USA.

出版信息

Mol Genet Genomics. 2017 Aug;292(4):909-922. doi: 10.1007/s00438-017-1320-6. Epub 2017 Apr 26.

Abstract

Many forms of neurodegenerative disease are characterized by Wallerian degeneration, an active program of axonal destruction. Recently, the important player which enacts Wallerian degeneration was discovered, the multidomain protein SARM1. Since the SARM1 protein has classically been thought of as an innate immune molecule, its role in Wallerian degeneration has raised questions on the evolutionary forces acting on it. Here, we synthesize a picture of SARM1's evolution through various organisms by examining the molecular and genetic changes of SARM1 and the genes around it. Using proteins that possess domains homologous to SARM1, we established distances and Ka/Ks values through 5671 pairwise species-species comparisons. We demonstrate that SARM1 diverged across species in a pattern similar to other SAM domain-containing proteins. This is surprising, because it was expected that SARM1 would behave more like its TIR domain relatives. Going along with this divorce from TIR, we also noted that SARM1's TIR is under stronger purifying selection than the rest of the TIR domain-containing proteins (remaining highly conserved). In addition, SARM1's synteny analysis reveals that the surrounding gene cluster is highly conserved, functioning as a potential nexus of gene functionality across species. Taken together, SARM1 demonstrates a unique evolutionary pattern, separate from the TIR domain protein family.

摘要

许多形式的神经退行性疾病都以沃勒变性为特征,这是一种轴突破坏的活跃过程。最近,人们发现了引发沃勒变性的重要因子——多结构域蛋白SARM1。由于SARM1蛋白传统上被认为是一种先天性免疫分子,它在沃勒变性中的作用引发了关于作用于它的进化力量的问题。在这里,我们通过研究SARM1及其周围基因的分子和遗传变化,综合描绘了SARM1在各种生物体中的进化情况。利用与SARM1具有同源结构域的蛋白质,我们通过5671对物种间的比较确定了距离和Ka/Ks值。我们证明,SARM1在物种间的分化模式与其他含SAM结构域的蛋白质相似。这很令人惊讶,因为预计SARM1的行为会更像其含TIR结构域的亲属。伴随着与TIR的这种分离,我们还注意到,与其他含TIR结构域的蛋白质相比,SARM1的TIR受到更强的纯化选择(保持高度保守)。此外,SARM1的共线性分析表明,其周围的基因簇高度保守,作为跨物种基因功能的潜在连接点发挥作用。综上所述,SARM1展示了一种独特的进化模式,与TIR结构域蛋白家族不同。

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