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胱硫醚β-合酶的结构表征与功能分析:一种参与炭疽芽孢杆菌反向转硫途径的酶

Structural characterization and functional analysis of cystathionine β-synthase: an enzyme involved in the reverse transsulfuration pathway of Bacillus anthracis.

作者信息

Devi Suneeta, Abdul Rehman Syed A, Tarique Khaja F, Gourinath Samudrala

机构信息

Structural Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, India.

MRC Protein Phosphorylation & Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.

出版信息

FEBS J. 2017 Nov;284(22):3862-3880. doi: 10.1111/febs.14273. Epub 2017 Oct 3.

Abstract

UNLABELLED

The reverse transsulfuration pathway has been reported to produce cysteine from homocysteine in eukaryotes ranging from protozoans to mammals while bacteria and plants produce cysteine via a de novo pathway. Interestingly, the bacterium Bacillus anthracis includes enzymes of the reverse transsulfuration pathway viz. cystathionine β-synthase [BaCBS, previously annotated to be an O-acetylserine sulfhydrylase (OASS)] and cystathionine γ-lyase. Here, we report the structure of BaCBS at a resolution of 2.2 Å. The enzyme was found to show CBS activity only with activated serine (O-acetylserine) and not with serine, and was also observed to display OASS activity but not serine sulfhydrylase activity. BaCBS was also found to produce hydrogen sulfide (H S) upon reaction of cysteine and homocysteine. A mutational study revealed Glu 220, conserved in CBS, to be necessary for generating H S. Structurally, BaCBS display a considerably more open active site than has been found for any other CBS or OASS, which was attributed to the presence of a helix at the junction of the C- and N-terminal domains. The root-mean-square deviation (RMSD) between the backbone Cα carbon atoms of BaCBS and those of other CBSs and OASSs were calculated to be greater than 3.0 Å. The pyridoxal 5'-phosphate at the active site was not traced, and appeared to be highly flexible due to the active site being wide open. Phylogenetic analysis revealed the presence of an O-acetylserine-dependent CBS in the bacterial domain and making separate clade from CBS and OASS indicating its evolution for specific function.

DATABASE

Structural data are available in the PDB under the accession number 5XW3.

摘要

未标记

据报道,在从原生动物到哺乳动物的真核生物中,转硫途径的逆向反应可将同型半胱氨酸转化为半胱氨酸,而细菌和植物则通过从头合成途径产生半胱氨酸。有趣的是,炭疽芽孢杆菌含有转硫途径逆向反应的酶,即胱硫醚β-合酶[BaCBS,先前注释为O-乙酰丝氨酸巯基化酶(OASS)]和胱硫醚γ-裂解酶。在此,我们报道了分辨率为2.2 Å的BaCBS结构。发现该酶仅对活化的丝氨酸(O-乙酰丝氨酸)显示CBS活性,而对丝氨酸无活性,并且还观察到其具有OASS活性,但不具有丝氨酸巯基化酶活性。还发现BaCBS在半胱氨酸和同型半胱氨酸反应时会产生硫化氢(H₂S)。一项突变研究表明,CBS中保守的Glu 220对于生成H₂S是必需的。在结构上,BaCBS的活性位点比任何其他CBS或OASS的活性位点都要开放得多,这归因于在C端和N端结构域的交界处存在一个螺旋。计算得出BaCBS与其他CBS和OASS的主链Cα碳原子之间的均方根偏差(RMSD)大于3.0 Å。活性位点处的磷酸吡哆醛5'-磷酸未被追踪,并且由于活性位点非常开放,它似乎具有高度的灵活性。系统发育分析表明,在细菌域中存在一种依赖O-乙酰丝氨酸的CBS,并且与CBS和OASS形成单独的进化枝,表明其具有特定功能的进化。

数据库

结构数据可在蛋白质数据库(PDB)中获取,登录号为5XW3。

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