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Tinker 8:分子设计软件工具。

Tinker 8: Software Tools for Molecular Design.

机构信息

Program in Computational & Molecular Biophysics , Washington University School of Medicine , Saint Louis , Missouri 63110 , United States.

Department of Chemistry , Washington University in Saint Louis , Saint Louis , Missouri 63130 , United States.

出版信息

J Chem Theory Comput. 2018 Oct 9;14(10):5273-5289. doi: 10.1021/acs.jctc.8b00529. Epub 2018 Sep 19.

Abstract

The Tinker software, currently released as version 8, is a modular molecular mechanics and dynamics package written primarily in a standard, easily portable dialect of Fortran 95 with OpenMP extensions. It supports a wide variety of force fields, including polarizable models such as the Atomic Multipole Optimized Energetics for Biomolecular Applications (AMOEBA) force field. The package runs on Linux, macOS, and Windows systems. In addition to canonical Tinker, there are branches, Tinker-HP and Tinker-OpenMM, designed for use on message passing interface (MPI) parallel distributed memory supercomputers and state-of-the-art graphical processing units (GPUs), respectively. The Tinker suite also includes a tightly integrated Java-based graphical user interface called Force Field Explorer (FFE), which provides molecular visualization capabilities as well as the ability to launch and control Tinker calculations.

摘要

Tinker 软件目前发布到第 8 版,是一个模块化的分子力学和动力学软件包,主要用带有 OpenMP 扩展的标准、易于移植的 Fortran 95 方言编写。它支持多种力场,包括可极化模型,如用于生物分子应用的原子多极优化能量(AMOEBA)力场。该软件包在 Linux、macOS 和 Windows 系统上运行。除了标准的 Tinker 之外,还有 Tinker-HP 和 Tinker-OpenMM 分支,分别设计用于消息传递接口(MPI)并行分布式内存超级计算机和最先进的图形处理单元(GPU)。Tinker 套件还包括一个紧密集成的基于 Java 的图形用户界面,称为力场探索器(FFE),它提供分子可视化功能以及启动和控制 Tinker 计算的能力。

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