Pavón-Romero Gandhi F, Pérez-Rubio Gloria, Ramírez-Jiménez Fernando, Ambrocio-Ortiz Enrique, Bañuelos-Ortiz Elisé, Alvarado-Franco Norma, Xochipa-Ruiz Karen E, Hernández-Juárez Elizabeth, Flores-García Beatriz A, Camarena Ángel E, Terán Luis M, Falfán-Valencia Ramcés
Department of Immunogenetics and Allergy, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, Mexico.
HLA Laboratory, Instituto Nacional Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, Mexico.
Front Genet. 2018 Sep 11;9:363. doi: 10.3389/fgene.2018.00363. eCollection 2018.
Aspirin exacerbated respiratory disease (AERD) is a set of diseases of the unified airway, and its physiopathology is related to disruption of the metabolism of arachidonic acid (AA). Genetic association studies in AERD had explored single nucleotide polymorphism (SNPs) in several genes related to many mechanisms (AA metabolism, inflammation, drug metabolism, etc.) but most lack validation stages in second populations. Our aim is to evaluated whether contribution to susceptibility of SNPs reported in other populations are associated with AERD in Mexican Mestizo patients. We developed a replicative study in two stages. In the first, 381 SNPs selected by fine mapping of associated genes, (previously reported in the literature), were integrated into a microarray and tested in three groups (AERD, asthma and healthy controls -HC-) using the GoldenGate array. Results associated to risk based on genetic models [comparing: AERD vs. HC (comparison 1, C1), AERD vs. asthma (C2), and asthma vs. HC (C3)] were validated in the second stage in other population groups using qPCR. In the first stage, we identified 11 SNPs associated with risk in C1.The top SNPs were rs4309C ( = 0.0001) and rs573790C ( = 0.0002). In C2, we detected 14 SNPs, including rs4309C ( = 0.0001). In C3, we found rs573790C ( = 0.001). Using genetic models, C1 rs57370 CC ( = 0.001), and rs4309 CC ( = 0.002) had associations. In C2 rs4309 CC ( = 0.0001) and C3 rs573790 CC ( = 0.001) were also associate with risk. In the second stage, only rs573790 CC had significance in C1 and C3 ( = 0.008 and = 0.03). We concluded that rs573790 in the gene is the only SNP that supports an association with AERD in Mexican Mestizo patients in both stages of the study.
阿司匹林加重性呼吸系统疾病(AERD)是一组气道统一的疾病,其病理生理学与花生四烯酸(AA)代谢紊乱有关。AERD的基因关联研究探索了与多种机制(AA代谢、炎症、药物代谢等)相关的几个基因中的单核苷酸多态性(SNP),但大多数缺乏在第二人群中的验证阶段。我们的目的是评估在其他人群中报道的SNP对易感性的贡献是否与墨西哥梅斯蒂索患者的AERD相关。我们分两个阶段开展了一项重复性研究。在第一阶段,通过对相关基因(先前在文献中报道)进行精细定位选择的381个SNP被整合到一个微阵列中,并使用金标准芯片在三组(AERD组、哮喘组和健康对照组-HC-)中进行检测。基于遗传模型的风险相关结果[比较:AERD组与HC组(比较1,C1)、AERD组与哮喘组(C2)以及哮喘组与HC组(C3)]在第二阶段使用qPCR在其他人群组中进行验证。在第一阶段,我们在C1中鉴定出11个与风险相关的SNP。排名靠前的SNP是rs4309C(P = 0.0001)和rs573790C(P = 0.0002)。在C2中,我们检测到14个SNP,包括rs4309C(P = 0.0001)。在C3中,我们发现rs573790C(P = 0.001)。使用遗传模型,C1中的rs57370 CC(P = 0.001)和rs4309 CC(P = 0.002)存在关联。在C2中rs4309 CC(P = 0.0001)以及在C3中rs573790 CC(P = 0.001)也与风险相关。在第二阶段,仅rs573790 CC在C1和C3中具有显著性(P = 0.008和P = 0.03)。我们得出结论,在研究的两个阶段中,基因中的rs573790是唯一支持与墨西哥梅斯蒂索患者AERD相关联的SNP。