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解析靶向弓形虫 RON4 的眼科适应性抑制剂:一种综合的计算方法。

Deciphering ophthalmic adaptive inhibitors targeting RON4 of Toxoplasma gondii: An integrative in silico approach.

机构信息

Centre for Bioinformatics, Kamalnayan Bajaj Institute for Research in Vision and Ophthalmology, Vision Research Foundation, Sankara Nethralaya, Chennai 600 006, Tamil Nadu, India.

Centre for Bioinformatics, Kamalnayan Bajaj Institute for Research in Vision and Ophthalmology, Vision Research Foundation, Sankara Nethralaya, Chennai 600 006, Tamil Nadu, India.

出版信息

Life Sci. 2018 Nov 15;213:82-93. doi: 10.1016/j.lfs.2018.10.022. Epub 2018 Oct 13.

Abstract

AIMS

Toxoplasma gondii (T. gondii) is an intracellular Apicomplexan parasite and a causative agent of toxoplasmosis in human. Its parasitic invasion leads to encephalitis, uveitis, chorioretinitis and congenital infection. Host invasion by T. gondii is mediated by Moving junction (MJ) complex formed by secretory proteins such as micronemes and Rhoptry Neck proteins (RONs). Among these secretory proteins, RON4 shows major interactions with RON2 and RON5 of MJ complex and is also found to facilitate invasion by interacting with β-tubulin of the host. Therefore, drug targeting of RON4 is considered to be an effective modality to inhibit host invasion.

MAIN METHODS

Hence, in this study, we have implemented High throughput virtual screening (HTVS) against predicted novel druggable cavity on RON4, in order to prioritize potential inhibitors. This study also specifically focuses on identifying potential drugs that are ocular accommodative towards targeting ocular toxoplasmosis. Thus, the small molecules resulting from HTVS were subjected to stringent multi-level precision screening which involves PASS prediction, Density functional theory analysis, Binding Free Energy Calculations and stability of complex formation during molecular dynamics simulation to prioritize the potential hits.

KEY FINDINGS

Among the compounds from NCI chemical library, five (338683, 333739, 686585, 159706, 405935) were found to surpass all the stringent filtration criteria.

SIGNIFICANCE

Based on comparatively analysis, it was inferred that 333739 (benzyl 2-((2-(((benzyloxy) carbonyl) amino)-3-hydroxybutanoyl) amino) propanoate) to be highly potential in comparison to other compounds and shall prove to be an efficient inhibitor of RON4 in ocular toxoplasmosis.

摘要

目的

刚地弓形虫(T. gondii)是一种细胞内顶复门寄生虫,也是人类弓形虫病的病原体。其寄生虫入侵可导致脑炎、葡萄膜炎、脉络膜炎和先天性感染。刚地弓形虫对宿主的入侵是由分泌蛋白如微线体和棒状体颈蛋白(RONs)形成的运动连接(MJ)复合物介导的。在这些分泌蛋白中,RON4 与 MJ 复合物中的 RON2 和 RON5 表现出主要相互作用,并且还发现它通过与宿主的β-微管蛋白相互作用来促进入侵。因此,RON4 的药物靶向被认为是抑制宿主入侵的有效方式。

主要方法

因此,在这项研究中,我们对 RON4 上预测的新型可药物靶腔实施了高通量虚拟筛选(HTVS),以确定潜在的抑制剂。本研究还特别关注识别对眼部弓形虫病具有眼适应性的潜在药物。因此,HTVS 产生的小分子经过严格的多层次精度筛选,包括 PASS 预测、密度泛函理论分析、结合自由能计算和分子动力学模拟中的复合物形成稳定性,以确定潜在的命中。

主要发现

在 NCI 化学库的化合物中,有五种(338683、333739、686585、159706、405935)被发现超过了所有严格的过滤标准。

意义

基于比较分析,推断 333739(苄基 2-((2-((苄氧基)羰基)氨基)-3-羟基丁酰基)氨基)丙酸盐)与其他化合物相比具有更高的潜力,并且有望成为眼部弓形虫病中 RON4 的高效抑制剂。

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