Suppr超能文献

通过遗传密码扩展实现翻译后修饰的化学生物学和光遗传学控制。

Chemogenetic and optogenetic control of post-translational modifications through genetic code expansion.

机构信息

Department of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.

Department of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.

出版信息

Curr Opin Chem Biol. 2021 Aug;63:123-131. doi: 10.1016/j.cbpa.2021.02.016. Epub 2021 Apr 9.

Abstract

Post-translational modifications (PTMs) of proteins extensively diversify the biological information flow from the genome to the proteome and thus have profound pathophysiological implications. Precise dissection of the regulatory networks of PTMs benefits from the ability to achieve conditional control through external optogenetic or chemogenetic triggers. Genetic code expansion provides a unique solution by allowing for site-specific installation of functionally masked unnatural amino acids (UAAs) into proteins, such as enzymes and enzyme substrates, rendering them inert until rapid activation through exposure to light or small molecules. Here, we summarize the most recent advances harnessing this methodology to study various forms of PTMs, as well as generalizable approaches to externally control nodes-of-interest in PTM networks.

摘要

蛋白质的翻译后修饰(PTMs)广泛地使从基因组到蛋白质组的生物信息流多样化,因此具有深远的病理生理学意义。通过外部光遗传学或化学生物学触发实现条件控制的能力,有助于精确剖析 PTMs 的调控网络。遗传密码扩展通过允许将功能掩蔽的非天然氨基酸(UAAs)定点安装到酶和酶底物等蛋白质中,为解决这一问题提供了独特的解决方案,从而使它们在暴露于光或小分子之前保持惰性。在这里,我们总结了利用这种方法研究各种形式的 PTM 的最新进展,以及对外在控制 PTM 网络中的感兴趣节点的通用方法。

相似文献

1
Chemogenetic and optogenetic control of post-translational modifications through genetic code expansion.
Curr Opin Chem Biol. 2021 Aug;63:123-131. doi: 10.1016/j.cbpa.2021.02.016. Epub 2021 Apr 9.
3
4
Genetic code expansion reveals aminoacylated lysine ubiquitination mediated by UBE2W.
Nat Struct Mol Biol. 2023 Jan;30(1):62-71. doi: 10.1038/s41594-022-00866-9. Epub 2023 Jan 2.
5
Applications of Genetic Code Expansion in Studying Protein Post-translational Modification.
J Mol Biol. 2022 Apr 30;434(8):167424. doi: 10.1016/j.jmb.2021.167424. Epub 2021 Dec 28.
6
Chemical biology approaches for studying posttranslational modifications.
RNA Biol. 2018;15(4-5):427-440. doi: 10.1080/15476286.2017.1360468. Epub 2017 Sep 21.
7
Effects of Crosstalks Between Sumoylation and Phosphorylation in Normal Cellular Physiology and Human Diseases.
Curr Mol Med. 2017;16(10):906-913. doi: 10.2174/1566524016666161223105555.
8
Recent Development of Genetic Code Expansion for Posttranslational Modification Studies.
Molecules. 2018 Jul 8;23(7):1662. doi: 10.3390/molecules23071662.
9
10
Crosstalk between Ubiquitination and Other Post-translational Protein Modifications in Plant Immunity.
Plant Commun. 2020 Mar 25;1(4):100041. doi: 10.1016/j.xplc.2020.100041. eCollection 2020 Jul 13.

引用本文的文献

1
Advancements in DNA-Driven Precision Modulation of Cell Surface Receptor for Programmable Cellular Functions.
Adv Sci (Weinh). 2025 Aug;12(32):e05073. doi: 10.1002/advs.202505073. Epub 2025 Jun 30.
2
Spatiotemporal control of subcellular O-GlcNAc signaling using Opto-OGT.
Nat Chem Biol. 2025 Feb;21(2):300-308. doi: 10.1038/s41589-024-01770-7. Epub 2024 Nov 14.
3
Human-derived monoclonal autoantibodies as interrogators of cellular proteotypes in the brain.
Trends Neurosci. 2024 Oct;47(10):753-765. doi: 10.1016/j.tins.2024.08.004. Epub 2024 Sep 5.
4
Cellular Site-Specific Incorporation of Noncanonical Amino Acids in Synthetic Biology.
Chem Rev. 2024 Sep 25;124(18):10577-10617. doi: 10.1021/acs.chemrev.3c00938. Epub 2024 Aug 29.
5
Blocking and rescuing tryptophan interactions.
Nat Chem. 2024 Apr;16(4):485-486. doi: 10.1038/s41557-024-01478-0.
6
Orthogonal Translation for Site-Specific Installation of Post-translational Modifications.
Chem Rev. 2024 Mar 13;124(5):2805-2838. doi: 10.1021/acs.chemrev.3c00850. Epub 2024 Feb 19.
7
Monitoring host-pathogen interactions using chemical proteomics.
RSC Chem Biol. 2023 Nov 10;5(2):73-89. doi: 10.1039/d3cb00135k. eCollection 2024 Feb 7.
8
Visible Light-Induced Specific Protein Reaction Delineates Early Stages of Cell Adhesion.
J Am Chem Soc. 2023 Nov 15;145(45):24459-24465. doi: 10.1021/jacs.3c07827. Epub 2023 Oct 31.
9
Isoform-specific optical activation of kinase function reveals p38-ERK signaling crosstalk.
RSC Chem Biol. 2023 Aug 25;4(10):765-773. doi: 10.1039/d2cb00157h. eCollection 2023 Oct 4.
10
Visible light-induced specific protein reaction delineates early stages of cell adhesion.
bioRxiv. 2023 Jul 22:2023.07.21.549850. doi: 10.1101/2023.07.21.549850.

本文引用的文献

1
Deciphering protein post-translational modifications using chemical biology tools.
Nat Rev Chem. 2020 Dec;4(12):674-695. doi: 10.1038/s41570-020-00223-8. Epub 2020 Oct 6.
2
Optical control of MAP kinase kinase 6 (MKK6) reveals that it has divergent roles in pro-apoptotic and anti-proliferative signaling.
J Biol Chem. 2020 Jun 19;295(25):8494-8504. doi: 10.1074/jbc.RA119.012079. Epub 2020 May 5.
3
Light-Activatable TET-Dioxygenases Reveal Dynamics of 5-Methylcytosine Oxidation and Transcriptome Reorganization.
J Am Chem Soc. 2020 Apr 22;142(16):7289-7294. doi: 10.1021/jacs.0c01193. Epub 2020 Apr 14.
4
Mechanisms for the temporal regulation of substrate ubiquitination by the anaphase-promoting complex/cyclosome.
Cell Div. 2019 Dec 23;14:14. doi: 10.1186/s13008-019-0057-5. eCollection 2019.
5
Phosphine-Activated Lysine Analogues for Fast Chemical Control of Protein Subcellular Localization and Protein SUMOylation.
Chembiochem. 2020 Jan 15;21(1-2):141-148. doi: 10.1002/cbic.201900464. Epub 2019 Oct 30.
6
Optical control of protein phosphatase function.
Nat Commun. 2019 Sep 26;10(1):4384. doi: 10.1038/s41467-019-12260-z.
7
Getting out of mitosis: spatial and temporal control of mitotic exit and cytokinesis by PP1 and PP2A.
FEBS Lett. 2019 Oct;593(20):2908-2924. doi: 10.1002/1873-3468.13595. Epub 2019 Sep 18.
8
Genetically Encoded Protein Tyrosine Nitration in Mammalian Cells.
ACS Chem Biol. 2019 Jun 21;14(6):1328-1336. doi: 10.1021/acschembio.9b00371. Epub 2019 Jun 4.
9
10
Time-resolved protein activation by proximal decaging in living systems.
Nature. 2019 May;569(7757):509-513. doi: 10.1038/s41586-019-1188-1. Epub 2019 May 8.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验