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大数据时代的本科神经科学教育中的定量技能。

Quantitative skills in undergraduate neuroscience education in the age of big data.

机构信息

David & Dorothy Merksamer Professor of Biology, Howard Hughes Medical Institute Professor, Department of Neurobiology and Behavior, Cornell University, Ithaca, NY 14853, United States.

出版信息

Neurosci Lett. 2021 Aug 10;759:136074. doi: 10.1016/j.neulet.2021.136074. Epub 2021 Jun 18.

Abstract

For over a half-Century, the mathematics requirement for graduation at most undergraduate colleges and universities has been one year of calculus and a semester of statistics. Many universities and colleges offer a neuroscience major that may or may not add additional mathematics, statistics, or data science requirements. Today in the age of Big Data and Systems Neuroscience, many students are ill-equipped for the future without the tools of computational competency that are necessary to tackle the large data sets generated by contemporary neuroscience research. Required courses in statistics still focus on parametric statistics based on the normal distribution and do not provide the computational tools required to analyze big data sets. Undergraduates in STEM fields including neuroscience need to enroll in the Data Science courses that are required in the social sciences (e.g., economics, political science and psychology). Contemporary systems neuroscience is routinely done by interdisciplinary research teams of statisticians, engineers, and physical scientists. Emerging "NeuroX-omics" such as connectomics have emerged along with genomics, proteomics, and transcriptomics, all of which deploy systems analysis techniques based on mathematical graph theory. Connectomics is the 21st Century's functional neuroanatomy. Whole brain connectome research appears almost monthly in the Drosphila, zebra fish, and mouse literature, and human brain connectomics is not far behind. The techniques for connectomics rely on the tools of data science. Undergraduate neuroscience students are already squeezed for credit hours given the high-prescribed science curriculum for biology majors and premedical students, in addition to required courses in social sciences and humanities. However, additional training in mathematics, statistics, computer science, and/or data science is urgently needed for undergraduate neuroscience majors just to understand the contemporary research literature. Undoubtedly, the faculty who teach neuroscience courses are acutely aware of the problem and most of them freely acknowledge the importance of quantitative analytical skills for their students. However, some faculty members may feel that their own math and statistics knowledge or other analytical skills have atrophied beyond recall or were never fulfilled in the first place. In this commentary I suggest that this problem can be ameliorated, though not solved, through organizing workshops, journal clubs, or independent studies courses in which the students and the instructors learn and teach each other in short-course format. In addition, web-available teaching materials such as targeted video clips are plentifully available on the internet. To attract and maintain student interest, qauntitative instruction and learning should occur in neuroscience context.

摘要

半个多世纪以来,大多数本科院校的毕业数学要求是一年的微积分和一学期的统计学。许多大学和学院提供神经科学专业,该专业可能会或可能不会增加额外的数学、统计学或数据科学要求。如今,在大数据和系统神经科学时代,许多学生没有计算能力的工具,无法应对当代神经科学研究产生的大型数据集,因此他们对未来毫无准备。统计学的必修课仍然侧重于基于正态分布的参数统计,而没有提供分析大数据集所需的计算工具。包括神经科学在内的 STEM 领域的本科生需要选修社会科学(例如经济学、政治学和心理学)要求的数据分析课程。当代系统神经科学通常由统计学家、工程师和物理科学家组成的跨学科研究团队完成。新兴的“神经组学”(如连接组学)与基因组学、蛋白质组学和转录组学一起出现,所有这些都部署了基于数学图论的系统分析技术。连接组学是 21 世纪的功能神经解剖学。全脑连接组研究几乎每月都出现在果蝇、斑马鱼和老鼠文献中,人类大脑连接组学也紧随其后。连接组学的技术依赖于数据科学的工具。由于生物学专业和医学生的高规定科学课程,本科生神经科学学生的学分已经很紧张,此外还需要学习社会科学和人文学科的必修课。然而,本科生神经科学专业的学生需要额外接受数学、统计学、计算机科学和/或数据科学的培训,仅仅是为了理解当代研究文献。毫无疑问,教授神经科学课程的教师非常清楚这个问题,他们中的大多数人都自由承认定量分析技能对学生的重要性。然而,一些教师可能觉得自己的数学和统计学知识或其他分析技能已经萎缩到无法回忆,或者一开始就没有完成。在这篇评论中,我建议可以通过组织研讨会、期刊俱乐部或独立学习课程来缓解这个问题,在这些课程中,学生和教师以短期课程的形式相互学习和教学。此外,互联网上有大量可用的网络教学材料,例如针对性的视频剪辑。为了吸引和保持学生的兴趣,定量教学和学习应该在神经科学的背景下进行。

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