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一种新的密度修正程序,将最近基于|ρ|的相位算法的应用扩展到更大的晶体结构。

A new density-modification procedure extending the application of the recent |ρ|-based phasing algorithm to larger crystal structures.

作者信息

Rius Jordi, Torrelles Xavier

机构信息

Institut de Ciència de Materials de Barcelona, CSIC, Campus de la UAB, Bellaterra, Catalonia 08193, Spain.

出版信息

Acta Crystallogr A Found Adv. 2021 Jul 1;77(Pt 4):339-347. doi: 10.1107/S2053273321004915. Epub 2021 Jun 21.

Abstract

The incorporation of the new peakness-enhancing fast Fourier transform compatible ipp procedure (ipp = inner-pixel preservation) into the recently published S algorithm based on |ρ| [Rius (2020). Acta Cryst A76, 489-493] improves its phasing efficiency for larger crystal structures with atomic resolution data. Its effectiveness is clearly demonstrated via a collection of test crystal structures (taken from the Protein Data Bank) either starting from random phase values or by using the randomly shifted modulus function (a Patterson-type synthesis) as initial ρ estimate. It has been found that in the presence of medium scatterers (e.g. S or Cl atoms) crystal structures with 1500 × c atoms in the unit cell (c = number of centerings) can be routinely solved. In the presence of strong scatterers like Fe, Cu or Zn atoms this number increases to around 5000 × c atoms. The implementation of this strengthened S algorithm is simple, since it only includes a few easy-to-adjust parameters.

摘要

将新的增强峰度的快速傅里叶变换兼容ipp程序(ipp = 像素内保留)纳入最近发表的基于|ρ|的S算法[Rius(2020年)。《晶体学报》A76卷,489 - 493页],可提高其对具有原子分辨率数据的较大晶体结构的定相效率。通过一组测试晶体结构(取自蛋白质数据库),无论是从随机相位值开始,还是使用随机移位的模量函数(一种帕特森型合成)作为初始ρ估计,都清楚地证明了其有效性。已经发现,在存在中等散射体(例如S或Cl原子)的情况下,晶胞中具有1500×c个原子(c = 定心数)的晶体结构可以常规求解。在存在诸如Fe、Cu或Zn等强散射体的情况下,这个数字增加到约5000×c个原子。这种增强的S算法的实现很简单,因为它只包含几个易于调整的参数。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d689/8248888/d8901216bdfc/a-77-00339-fig1.jpg

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