Rius Jordi, Torrelles Xavier
Institut de Ciència de Materials de Barcelona, CSIC, Campus de la UAB, Bellaterra, Catalonia 08193, Spain.
Acta Crystallogr A Found Adv. 2021 Jul 1;77(Pt 4):339-347. doi: 10.1107/S2053273321004915. Epub 2021 Jun 21.
The incorporation of the new peakness-enhancing fast Fourier transform compatible ipp procedure (ipp = inner-pixel preservation) into the recently published S algorithm based on |ρ| [Rius (2020). Acta Cryst A76, 489-493] improves its phasing efficiency for larger crystal structures with atomic resolution data. Its effectiveness is clearly demonstrated via a collection of test crystal structures (taken from the Protein Data Bank) either starting from random phase values or by using the randomly shifted modulus function (a Patterson-type synthesis) as initial ρ estimate. It has been found that in the presence of medium scatterers (e.g. S or Cl atoms) crystal structures with 1500 × c atoms in the unit cell (c = number of centerings) can be routinely solved. In the presence of strong scatterers like Fe, Cu or Zn atoms this number increases to around 5000 × c atoms. The implementation of this strengthened S algorithm is simple, since it only includes a few easy-to-adjust parameters.
将新的增强峰度的快速傅里叶变换兼容ipp程序(ipp = 像素内保留)纳入最近发表的基于|ρ|的S算法[Rius(2020年)。《晶体学报》A76卷,489 - 493页],可提高其对具有原子分辨率数据的较大晶体结构的定相效率。通过一组测试晶体结构(取自蛋白质数据库),无论是从随机相位值开始,还是使用随机移位的模量函数(一种帕特森型合成)作为初始ρ估计,都清楚地证明了其有效性。已经发现,在存在中等散射体(例如S或Cl原子)的情况下,晶胞中具有1500×c个原子(c = 定心数)的晶体结构可以常规求解。在存在诸如Fe、Cu或Zn等强散射体的情况下,这个数字增加到约5000×c个原子。这种增强的S算法的实现很简单,因为它只包含几个易于调整的参数。