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中药药对治疗抑郁症作用机制的网络药理学及分子对接分析

Network Pharmacology and Molecular Docking Analyses of Mechanisms Underlying Effects of the - Herb Pair on Depression.

作者信息

Shi Yanan, Chen Mingqi, Zhao Zehua, Pan Juhua, Huang Shijing

机构信息

Research and Development Center of Traditional Chinese Medicine, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Beijing 100053, China.

Graduate School, Beijing University of Chinese Medicine, Beijing 100029, China.

出版信息

Evid Based Complement Alternat Med. 2021 Dec 22;2021:5704578. doi: 10.1155/2021/5704578. eCollection 2021.

Abstract

OBJECTIVE

We aimed to investigate the mechanisms underlying the effects of the - herb pair (CCHP) against depression using a network pharmacology approach.

METHODS

A network pharmacology approach, including screening of active compounds, target prediction, construction of a protein-protein interaction (PPI) network, gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, and molecular docking, molecular dynamics (MD) simulations, and molecular mechanics Poisson-Boltzmann surface area (MMPBSA), were used to explore the mechanisms of CCHP against depression.

RESULTS

Twenty-six active compounds and 315 and 207 targets of CCHP and depression, respectively, were identified. The PPI network suggested that AKT1, IL-6, TP53, DRD2, MAPK1, NR3C1, TNF, etc., were core targets. GO enrichment analyses showed that positive regulation of transcription from RNA polymerase II promoter, plasma membrane, and protein binding were of great significance. Neuroactive ligand-receptor interaction, PI3K-Akt signaling pathway, dopaminergic synapse, and mTOR signaling pathway were important pathways. Molecular docking results revealed good binding affinities for the core compounds and core targets. MD simulations and MMPBSA validated that quercetin can stably bind to 6hhi.

CONCLUSIONS

The effects of CCHP against depression involve multiple components, targets, and pathways, and these findings will promote further research on and clinical application of CCHP.

摘要

目的

我们旨在采用网络药理学方法研究柴芩黄连药对(CCHP)抗抑郁作用的潜在机制。

方法

采用网络药理学方法,包括活性成分筛选、靶点预测、蛋白质-蛋白质相互作用(PPI)网络构建、基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析,以及分子对接、分子动力学(MD)模拟和分子力学泊松-玻尔兹曼表面积(MMPBSA),以探索CCHP抗抑郁的机制。

结果

分别鉴定出CCHP的26种活性成分以及CCHP和抑郁症的315个和207个靶点。PPI网络表明,AKT1、IL-6、TP53、DRD2、MAPK1、NR3C1、TNF等是核心靶点。GO富集分析表明,RNA聚合酶II启动子转录的正调控、质膜和蛋白质结合具有重要意义。神经活性配体-受体相互作用、PI3K-Akt信号通路、多巴胺能突触和mTOR信号通路是重要通路。分子对接结果显示核心化合物与核心靶点具有良好的结合亲和力。MD模拟和MMPBSA验证了槲皮素能与6hhi稳定结合。

结论

CCHP的抗抑郁作用涉及多个成分、靶点和通路,这些发现将促进对CCHP的进一步研究和临床应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01ae/8716227/b28a4237d880/ECAM2021-5704578.001.jpg

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