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准确模拟脂质单层需要具有正确表面张力的水模型。

Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension.

机构信息

Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 542/2, 160 00 Prague 6, Czech Republic.

Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.

出版信息

J Chem Theory Comput. 2022 Mar 8;18(3):1862-1869. doi: 10.1021/acs.jctc.1c00951. Epub 2022 Feb 8.

Abstract

Lipid monolayers provide our lungs and eyes their functionality and serve as proxy systems in biomembrane research. Therefore, lipid monolayers have been studied intensively including using molecular dynamics simulations, which are able to probe their lateral structure and interactions with, e.g., pharmaceuticals or nanoparticles. However, such simulations have struggled in describing the forces at the air-water interface. Particularly, the surface tension of water and long-range van der Waals interactions have been considered critical, but their importance in monolayer simulations has been evaluated only separately. Here, we combine the recent C36/LJ-PME lipid force field that includes long-range van der Waals forces with water models that reproduce experimental surface tensions to elucidate the importance of these contributions in monolayer simulations. Our results suggest that a water model with correct surface tension is necessary to reproduce experimental surface pressure-area isotherms and monolayer phase behavior. The latter includes the liquid expanded and liquid condensed phases, their coexistence, and the opening of pores at the correct area per lipid upon expansion. Despite these improvements of the C36/LJ-PME with certain water models, the standard cutoff-based CHARMM36 lipid model with the 4-point OPC water model still provides the best agreement with experiments. Our results emphasize the importance of using high-quality water models in applications and parameter development in molecular dynamics simulations of biomolecules.

摘要

脂质单层为肺部和眼睛提供了功能,并作为生物膜研究中的替代系统。因此,人们对脂质单层进行了深入研究,包括使用分子动力学模拟,以探测其横向结构以及与药物或纳米颗粒的相互作用。然而,这种模拟在描述气-液界面的力方面存在困难。特别是,水的表面张力和长程范德华相互作用被认为是关键因素,但它们在单层模拟中的重要性仅分别进行了评估。在这里,我们将包括长程范德华力的最新 C36/LJ-PME 脂质力场与能够重现实验表面张力的水模型相结合,以阐明这些贡献在单层模拟中的重要性。我们的结果表明,具有正确表面张力的水模型对于重现实验表面压力-面积等温线和单层相行为是必要的。后者包括在膨胀时正确的每脂质面积出现的液体膨胀相和液体凝聚相、它们的共存以及孔的打开。尽管 C36/LJ-PME 与某些水模型的改进,但基于标准截止值的 CHARMM36 脂质模型与 4 点 OPC 水模型仍然与实验结果具有最佳的一致性。我们的结果强调了在生物分子的分子动力学模拟中应用和参数开发中使用高质量水模型的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fce/8908734/d66c589058de/ct1c00951_0001.jpg

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