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一种基于网络引导的方法来发现基于植物化学物质的抗癌疗法:针对肝细胞癌的MARK4靶点

A Network-Guided Approach to Discover Phytochemical-Based Anticancer Therapy: Targeting MARK4 for Hepatocellular Carcinoma.

作者信息

Ahmed Sarfraz, Mobashir Mohammad, Al-Keridis Lamya Ahmed, Alshammari Nawaf, Adnan Mohd, Abid Mohammad, Hassan Md Imtaiyaz

机构信息

Department of Biosciences, Faculty of Natural Science, Jamia Millia Islamia, New Delhi, India.

Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, India.

出版信息

Front Oncol. 2022 Jul 22;12:914032. doi: 10.3389/fonc.2022.914032. eCollection 2022.

Abstract

MAP/microtubule affinity-regulating kinase 4 (MARK4) is associated with various biological functions, including neuronal migration, cell polarity, microtubule dynamics, apoptosis, and cell cycle regulation, specifically in the G1/S checkpoint, cell signaling, and differentiation. It plays a critical role in different types of cancers. Hepatocellular carcinoma (HCC) is the one of the most common forms of liver cancer caused due to mutations, epigenetic aberrations, and altered gene expression patterns. Here, we have applied an integrated network biology approach to see the potential links of MARK4 in HCC, and subsequently identified potential herbal drugs. This work focuses on the naturally-derived compounds from medicinal plants and their properties, making them targets for potential anti-hepatocellular treatments. We further analyzed the HCC mutated genes from the TCGA database by using cBioPortal and mapped out the MARK4 targets among the mutated list. MARK4 and Mimosin, Quercetin, and Resveratrol could potentially interact with critical cancer-associated proteins. A set of the hepatocellular carcinoma altered genes is directly the part of infection, inflammation, immune systems, and cancer pathways. Finally, we conclude that among all these drugs, Gingerol and Fisetin appear to be the highly promising drugs against MARK4-based targets, followed by Quercetin, Resveratrol, and Apigenin.

摘要

丝裂原活化蛋白激酶/微管亲和力调节激酶4(MARK4)与多种生物学功能相关,包括神经元迁移、细胞极性、微管动力学、细胞凋亡以及细胞周期调控,特别是在G1/S期检查点、细胞信号传导和分化过程中。它在不同类型的癌症中起着关键作用。肝细胞癌(HCC)是由于突变、表观遗传异常和基因表达模式改变而导致的最常见的肝癌形式之一。在这里,我们应用了一种综合网络生物学方法来研究MARK4在HCC中的潜在联系,并随后鉴定出潜在的草药。这项工作聚焦于药用植物中的天然衍生化合物及其特性,使其成为潜在抗肝细胞治疗的靶点。我们通过使用cBioPortal进一步分析了来自TCGA数据库的HCC突变基因,并在突变列表中确定了MARK4的靶点。MARK4与含羞草碱、槲皮素和白藜芦醇可能会与关键癌症相关蛋白相互作用。一组肝细胞癌改变基因直接属于感染、炎症、免疫系统和癌症途径的一部分。最后,我们得出结论,在所有这些药物中,姜辣素和漆黄素似乎是针对基于MARK4的靶点最有前景的药物,其次是槲皮素、白藜芦醇和芹菜素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d837/9355243/20361e263b2f/fonc-12-914032-g001.jpg

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