Bot Jorik F, van der Oost John, Geijsen Niels
Dept. of Anatomy & Embryology, Leiden University Medical Center, Einthovenweg 20, 2300 RC Leiden, the Netherlands; The Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW), Leiden node, the Netherlands.
Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, the Netherlands.
Curr Opin Biotechnol. 2022 Dec;78:102789. doi: 10.1016/j.copbio.2022.102789. Epub 2022 Sep 14.
Since the discovery of RNA-programmable nucleases from the prokaryotic adaptive immune system CRISPR-Cas, these proteins have seen rapid and widespread adoption for biotechnological and clinical research. A recently discovered system, CRISPR-Cas13, uses CRISPR RNA guides to target RNA. Interestingly, RNA targeting by Cas13 results in cleavage of both target RNA and bystander RNA. This feature has been used to develop innovative diagnostic tools for the detection of specific RNAs. Unlike in vitro detection of RNA using collateral RNA cleavage, however, initial studies of mammalian cells only revealed highly specific target RNA-knockdown activity. Although these findings have been confirmed subsequently, several recent publications do report Cas13-mediated toxicity and collateral RNA cleavage when using Cas13 in eukaryotes. Here, we review these conflicting observations and discuss its potential molecular basis.
自从从原核生物适应性免疫系统CRISPR-Cas中发现RNA可编程核酸酶以来,这些蛋白质已迅速广泛应用于生物技术和临床研究。最近发现的CRISPR-Cas13系统利用CRISPR RNA引导序列靶向RNA。有趣的是,Cas13对RNA的靶向作用会导致靶RNA和旁邻RNA的切割。这一特性已被用于开发检测特定RNA的创新诊断工具。然而,与利用旁邻RNA切割进行RNA的体外检测不同,对哺乳动物细胞的初步研究仅揭示了高度特异性的靶RNA敲低活性。尽管这些发现随后得到了证实,但最近的几篇出版物确实报道了在真核生物中使用Cas13时Cas13介导的毒性和旁邻RNA切割。在这里,我们回顾这些相互矛盾的观察结果并讨论其潜在的分子基础。