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利用 中的植物化学物质对 1-DTP 抑制剂的计算机筛选

In Silico Identification of 1-DTP Inhibitors of Using Phytochemicals from .

机构信息

Department of Plant Biotechnology, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia.

Department of Life Sciences, CHRIST (Deemed to Be University), Bengaluru 560029, Karnataka, India.

出版信息

Molecules. 2023 Jan 16;28(2):909. doi: 10.3390/molecules28020909.

Abstract

A number of phytochemicals have been identified as promising drug molecules against a variety of diseases using an in-silico approach. The current research uses this approach to identify the phyto-derived drugs from (Burm. f.) Wall. ex Nees (AP) for the treatment of diphtheria. In the present study, 18 bioactive molecules from (obtained from the PubChem database) were docked against the diphtheria toxin using the AutoDock vina tool. Visualization of the top four molecules with the best dockscore, namely bisandrographolide (-10.4), andrographiside (-9.5), isoandrographolide (-9.4), and neoandrographolide (-9.1), helps gain a better understanding of the molecular interactions. Further screening using molecular dynamics simulation studies led to the identification of bisandrographolide and andrographiside as hit compounds. Investigation of pharmacokinetic properties, mainly ADMET, along with Lipinski's rule and binding affinity considerations, narrowed down the search for a potent drug to bisandrographolide, which was the only molecule to be negative for AMES toxicity. Thus, further modification of this compound followed by in vitro and in vivo studies can be used to examine itseffectiveness against diphtheria.

摘要

利用计算机模拟方法,已经确定了许多植物化学物质作为治疗多种疾病的有前途的药物分子。本研究利用这种方法,从(Burm. f.)Wall. ex Nees(AP)中寻找植物来源的药物来治疗白喉。在本研究中,使用 AutoDock vina 工具对 18 种来自(从 PubChem 数据库中获得)的生物活性分子对白喉毒素进行对接。可视化前四个对接得分最高的分子,即双二氢沉香呋喃醇(-10.4)、穿心莲内酯(-9.5)、异穿心莲内酯(-9.4)和新穿心莲内酯(-9.1),有助于更好地了解分子相互作用。进一步使用分子动力学模拟研究进行筛选,确定了双二氢沉香呋喃醇和穿心莲内酯为命中化合物。对药代动力学特性的研究,主要是 ADMET,以及 Lipinski 规则和结合亲和力的考虑,缩小了对有效药物的搜索范围,到双二氢沉香呋喃醇,这是唯一一种对 AMES 毒性呈阴性的分子。因此,对该化合物进行进一步修饰,然后进行体外和体内研究,可以用来检查其对白喉的疗效。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b027/9862189/2f1089213a64/molecules-28-00909-g001.jpg

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