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基质电子在黄素依赖的碘酪氨酸脱碘酶促进的还原脱卤反应中占主导地位。

Substrate Electronics Dominate the Rate of Reductive Dehalogenation Promoted by the Flavin-Dependent Iodotyrosine Deiodinase.

机构信息

Department of Chemistry, Johns Hopkins University, 3400 N. Charles St., Baltimore, Maryland 21218 United States.

Chemistry Biology Interface Graduate Program, Johns Hopkins University, 3400 N. Charles St., Baltimore, Maryland 21218 United States.

出版信息

Biochemistry. 2023 Apr 4;62(7):1298-1306. doi: 10.1021/acs.biochem.3c00041. Epub 2023 Mar 9.

Abstract

Iodotyrosine deiodinase (IYD) is unusual in its reliance on flavin to promote reductive dehalogenation of halotyrosines under aerobic conditions. Applications of this activity can be envisioned for bioremediation, but expansion of its specificity requires an understanding of the mechanistic steps that limit the rate of turnover. Key processes capable of controlling steady-state turnover have now been evaluated and described in this study. While proton transfer is necessary for converting the electron-rich substrate into an electrophilic intermediate suitable for reduction, kinetic solvent deuterium isotope effects suggest that this process does not contribute to the overall efficiency of catalysis under neutral conditions. Similarly, reconstituting IYD with flavin analogues demonstrates that a change in reduction potential by as much as 132 mV affects by less than 3-fold. Furthermore, / does not correlate with reduction potential and indicates that electron transfer is also not rate determining. Catalytic efficiency is most sensitive to the electronic nature of its substrates. Electron-donating substituents on the position of iodotyrosine stimulate catalysis and conversely electron-withdrawing substituents suppress catalysis. Effects on and / range from 22- to 100-fold and fit a linear free-energy correlation with a ρ ranging from -2.1 to -2.8 for human and bacterial IYD. These values are consistent with a rate-determining process of stabilizing the electrophilic and nonaromatic intermediate poised for reduction. Future engineering can now focus on efforts to stabilize this electrophilic intermediate over a broad series of phenolic substrates that are targeted for removal from our environment.

摘要

碘酪氨酸脱碘酶(IYD)在有氧条件下依赖黄素促进卤代酪氨酸的还原脱卤方面是不寻常的。该活性的应用可以设想用于生物修复,但要扩展其特异性,需要了解限制周转率的机制步骤。本研究现已评估和描述了能够控制稳态周转率的关键过程。虽然质子转移对于将富电子底物转化为适合还原的亲电中间体是必要的,但动力学溶剂氘同位素效应表明,在中性条件下,该过程不会对催化效率产生影响。同样,用黄素类似物重建 IYD 表明,还原电位的变化高达 132mV,对 的影响不到 3 倍。此外, 与还原电位无关,表明电子转移也不是决定反应速率的因素。催化效率对其底物的电子性质最为敏感。碘酪氨酸的 位上的供电子取代基刺激催化作用,相反,吸电子取代基抑制催化作用。 和 的影响范围从 22 倍到 100 倍,并与人类和细菌 IYD 的线性自由能相关,ρ 值范围从-2.1 到-2.8。这些值与稳定有利于还原的亲电和非芳族中间物的过程一致,该过程决定了反应速率。未来的工程现在可以集中精力努力稳定这种亲电中间物,以广泛的酚类底物系列为目标,这些底物是我们环境中要去除的。

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