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非发夹β转角中蛋白质主链的改变:对三级折叠结构和折叠稳定性的影响。

Protein Backbone Alteration in Non-Hairpin β-Turns: Impacts on Tertiary Folded Structure and Folded Stability.

机构信息

Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA 15260, USA.

出版信息

Chembiochem. 2023 Jun 1;24(11):e202300113. doi: 10.1002/cbic.202300113. Epub 2023 Mar 30.

Abstract

The importance of β-turns to protein folding has motivated extensive efforts to stabilize the motif with non-canonical backbone connectivity. Prior work has focused almost exclusively on turns between strands in a β-sheet (i. e., hairpins). Turns in other structural contexts are also common in nature and have distinct conformational preferences; however, design principles for their mimicry remain poorly understood. Here, we report strategies that stabilize non-hairpin β-turns through systematic evaluation of the impacts of backbone alteration on the high-resolution folded structure and folded stability of a helix-loop-helix prototype protein. Several well-established hairpin turn mimetics are shown detrimental to folded stability and/or hydrophobic core packing, while less-explored modification schemes that reinforce alternate turn types lead to improved stability and more faithful structural mimicry. Collectively, these results have implications in control over protein folding through chemical modification as well as the design of protein mimetics.

摘要

β-转角在蛋白质折叠中的重要性促使人们进行了大量努力,通过非经典的骨架连接来稳定这一结构。先前的工作几乎完全集中在β-折叠(即发夹)中链间的转角上。在其他结构环境中也存在转角,它们具有独特的构象偏好;然而,其模拟设计原则仍知之甚少。在这里,我们通过系统评估骨架改变对高分辨率折叠结构和螺旋环螺旋原型蛋白折叠稳定性的影响,报告了稳定非发夹β-转角的策略。一些成熟的发夹转角模拟物被证明对折叠稳定性和/或疏水性核心包装有害,而不太受关注的强化替代转角类型的修饰方案则导致稳定性提高和更忠实的结构模拟。总的来说,这些结果对于通过化学修饰控制蛋白质折叠以及蛋白质模拟物的设计都具有重要意义。

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Protein Backbone Alteration in Non-Hairpin β-Turns: Impacts on Tertiary Folded Structure and Folded Stability.
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