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栽培花生(Arachis hypogaea)SNARE 家族的全基因组分析显示,一些成员参与了胁迫响应。

Genome-Wide Analysis of the SNARE Family in Cultivated Peanut ( L.) Reveals That Some Members Are Involved in Stress Responses.

机构信息

Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Shandong Academy of Agricultural Sciences, Jinan 250100, China.

出版信息

Int J Mol Sci. 2023 Apr 12;24(8):7103. doi: 10.3390/ijms24087103.

Abstract

The superfamily of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins mediates membrane fusion during vesicular transport between endosomes and the plasma membrane in eukaryotic cells, playing a vital role in plant development and responses to biotic and abiotic stresses. Peanut ( L.) is a major oilseed crop worldwide that produces pods below ground, which is rare in flowering plants. To date, however, there has been no systematic study of SNARE family proteins in peanut. In this study, we identified 129 putative SNARE genes from cultivated peanut () and 127 from wild peanut (63 from , 64 from ). We sorted the encoded proteins into five subgroups (Qa-, Qb-, Qc-, Qb+c- and R-SNARE) based on their phylogenetic relationships with SNAREs. The genes were unevenly distributed on all 20 chromosomes, exhibiting a high rate of homolog retention from their two ancestors. We identified cis-acting elements associated with development, biotic and abiotic stresses in the promoters of peanut SNARE genes. Transcriptomic data showed that expression of SNARE genes is tissue-specific and stress inducible. We hypothesize that plays an important role in the storage of lipid proteins, while , and might play an important role in development and stress responses. Furthermore, we showed that three AhSNARE genes (, and ) enhance cold and NaCl tolerance in yeast (), especially . This systematic study provides valuable information about the functional characteristics of AhSNARE genes in the development and regulation of abiotic stress responses in peanut.

摘要

可溶性 N-乙基马来酰亚胺敏感因子附着蛋白受体(SNARE)超家族蛋白在真核细胞内的内体和质膜之间的囊泡运输过程中介导膜融合,在植物发育和对生物及非生物胁迫的响应中起着至关重要的作用。花生(L.)是全球主要的油料作物,其荚果生长在地下,这在开花植物中较为罕见。然而,迄今为止,对花生 SNARE 家族蛋白还没有进行系统研究。在这项研究中,我们从栽培花生()中鉴定出 129 个假定的 SNARE 基因,从野生花生()中鉴定出 127 个 SNARE 基因(63 个来自 ,64 个来自 )。我们根据与 SNAREs 的系统发育关系将编码蛋白分为五个亚组(Qa-、Qb-、Qc-、Qb+c-和 R-SNARE)。这些基因不均匀地分布在所有 20 条染色体上,从它们的两个祖先那里保留了很高的同源性。我们在花生 SNARE 基因的启动子中鉴定出与发育、生物和非生物胁迫相关的顺式作用元件。转录组数据表明,SNARE 基因的表达具有组织特异性和胁迫诱导性。我们假设 在脂质蛋白的储存中起着重要作用,而 、 和 可能在发育和应激响应中发挥重要作用。此外,我们还表明,三个 AhSNARE 基因(、 和 )增强了酵母()对冷和 NaCl 的耐受性,特别是 。这项系统研究为 AhSNARE 基因在花生发育和非生物胁迫响应调控中的功能特征提供了有价值的信息。

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