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利用多种方法对()中的类萌发素蛋白基因进行分子特征分析。

Molecular Characterization of Germin-like Protein Genes in () Using Various Approaches.

作者信息

Ilyas Muhammad, Ali Iftikhar, Nasser Binjawhar Dalal, Ullah Sami, Eldin Sayed M, Ali Baber, Iqbal Rashid, Bokhari Syed Habib Ali, Mahmood Tariq

机构信息

Department of Botany, Kohsar University Murree, Murree 19679, Punjab, Pakistan.

Centre for Plant Science and Biodiversity, University of Swat, Charbagh 19120, Pakistan.

出版信息

ACS Omega. 2023 Apr 26;8(18):16327-16344. doi: 10.1021/acsomega.3c01104. eCollection 2023 May 9.

Abstract

Germin (GER) and germin-like proteins (GLPs) play an important role in various plant processes. contains 26 germin-like protein genes () located on chromosomes 2, 4, and 10; most of which are functionally unexplored. The present study aimed to characterize all using the latest computational tools. All of them were studied at a physicochemical, subcellular, structural, and functional level, and their expression was predicted in plant development, against biotic and abiotic stresses using various approaches. Overall, ZmGLPs showed greater similarity in their physicochemical properties, domain architecture, and structure, mostly localized in the cytoplasmic or extracellular regions. Phylogenetically, they have a narrow genetic background with a recent history of gene duplication events on chromosome 4. Functional analysis revealed novel enzymatic activities of phosphoglycolate phosphatase, adenosylhomocysteinase, phosphoglycolate phosphatase-like, osmotin/thaumatin-like, and acetohydroxy acid isomeroreductase largely mediated by disulfide bonding. Expression analysis revealed their crucial role in the root, root tips, crown root, elongation and maturation zones, radicle, and cortex with the highest expression being observed during germination and at the maturity levels. Further, showed strong expression against biotic (, , , , and ) while limited expression was noted against abiotic stresses. Concisely, our results provide a platform for additional functional exploration of the genes against various environmental stresses.

摘要

胚萌发素(GER)和类胚萌发素蛋白(GLPs)在植物的各种生理过程中发挥着重要作用。[具体植物名称]含有26个类胚萌发素蛋白基因(ZmGLPs),位于2号、4号和10号染色体上;其中大部分基因的功能尚未得到研究。本研究旨在利用最新的计算工具对所有ZmGLPs进行表征。对所有ZmGLPs在物理化学、亚细胞、结构和功能水平上进行了研究,并使用各种生物信息学方法预测了它们在植物发育过程中以及应对生物和非生物胁迫时的表达情况。总体而言,ZmGLPs在物理化学性质、结构域结构和结构方面表现出更大的相似性,大多定位于细胞质或细胞外区域。从系统发育角度来看,它们的遗传背景较窄,在4号染色体上有近期的基因复制事件。功能分析揭示了磷酸乙醇酸磷酸酶、腺苷高半胱氨酸酶、类磷酸乙醇酸磷酸酶、渗透素/奇异果甜蛋白样蛋白以及乙酰羟酸异构还原酶等新的酶活性,这些活性很大程度上由二硫键介导。表达分析表明它们在根、根尖、冠根、伸长区和成熟区、胚根以及皮层中起着关键作用,在萌发期和成熟期表达量最高。此外,ZmGLPs对生物胁迫([具体生物胁迫因素])表现出强烈表达,而对非生物胁迫的表达有限。简而言之,我们的研究结果为进一步探索ZmGLPs基因在应对各种环境胁迫方面的功能提供了一个平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcf9/10173433/2e7fb8b3122f/ao3c01104_0002.jpg

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