Suppr超能文献

一项计算研究旨在鉴定芝麻酚衍生物作为 NRF2 激活剂,以防止药物性肝损伤 (DILI)。

A computational study to identify Sesamol derivatives as NRF2 activator for protection against drug-induced liver injury (DILI).

机构信息

Department of Pharmacognosy, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India.

Department of Pharmaceutical Chemistry, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India.

出版信息

Mol Divers. 2024 Jun;28(3):1709-1731. doi: 10.1007/s11030-023-10686-8. Epub 2023 Jul 1.

Abstract

Drug-induced liver injury can be caused by any drugs, their metabolites, or natural products due to the inefficient functioning of drug-metabolizing enzymes, resulting in reactive oxygen species generation and leading to oxidative stress-induced cell death. For protection against oxidative stress, our cell has various defense mechanisms. One of the mechanisms is NRF2 pathway, when activated, protects the cell against oxidative stress. Natural antioxidants such as Sesamol have reported pharmacological activity (hepatoprotective & cardioprotective) and signaling pathways (NRF2 & CREM) altering potential. A Computational analysis was done using molecular docking, IFD, ADMET, MM-GBSA, and Molecular dynamic simulation of the Schrödinger suite. A total of 63,345 Sesamol derivatives were downloaded for the PubChem database. The protein structure of KEAP1-NRF2 (PDB: 4L7D) was downloaded from the RCSB protein database. The molecular docking technique was used to screen compounds that can form an interaction similar to the co-crystalized ligand (1VX). Based on MM-GBSA, docking score, and interactions, ten compounds were selected for ADMET profiling and IFD. After IFD, five compounds (66867225, 46148111, 12444939, 123892179, & 94817569) were selected for molecular dynamics simulation (MDS). Protein-ligand complex stability was assessed during MDS. The selected compounds (66867225, 46148111, 12444939, 123892179, & 94817569) complex with KEAP1 protein shows good stability and bond retentions. In our study, we observed that the selected compounds show good interaction, PCA, R, binding free energy, and ADMET profile. We can conclude that the selected compounds can act as NRF2 activators, which should be validated using proper in-vivo/in-vitro models.

摘要

药物性肝损伤可由任何药物、其代谢物或天然产物引起,这是由于药物代谢酶的功能失调,导致活性氧的产生,并导致氧化应激诱导的细胞死亡。为了防止氧化应激,我们的细胞有各种防御机制。其中一种机制是 NRF2 途径,当被激活时,可保护细胞免受氧化应激。天然抗氧化剂如芝麻酚已被报道具有药理学活性(肝保护和心脏保护)和改变信号通路(NRF2 和 CREM)的潜力。使用分子对接、IFD、ADMET、MM-GBSA 和 Schrödinger 套件的分子动力学模拟进行了计算分析。从 PubChem 数据库中下载了总共 63345 个芝麻酚衍生物。KEAP1-NRF2(PDB:4L7D)的蛋白质结构从 RCSB 蛋白质数据库下载。使用分子对接技术筛选可以形成与共晶配体(1VX)相似相互作用的化合物。基于 MM-GBSA、对接评分和相互作用,选择了 10 种化合物进行 ADMET 分析和 IFD。IFD 后,选择了 5 种化合物(66867225、46148111、12444939、123892179 和 94817569)进行分子动力学模拟(MDS)。在 MDS 期间评估蛋白-配体复合物的稳定性。所选化合物(66867225、46148111、12444939、123892179 和 94817569)与 KEAP1 蛋白形成复合物表现出良好的稳定性和键保留。在我们的研究中,我们观察到所选化合物表现出良好的相互作用、PCA、R、结合自由能和 ADMET 谱。我们可以得出结论,所选化合物可以作为 NRF2 激活剂,这应该使用适当的体内/体外模型进行验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1782/11269468/a2ba44ae919e/11030_2023_10686_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验