Ikhimiukor Odion O, Souza Stephanie S R, Akintayo Ifeoluwa J, Marcovici Michael M, Workman Adrienne, Martin Isabella W, Andam Cheryl P
Department of Biological Sciences, University at Albany, State University of New York , Albany, New York, USA.
Institute for Infection Prevention and Hospital Epidemiology, Medical Centre, University of Freiburg , Freiburg, Germany.
Microbiol Spectr. 2023 Sep 7;11(5):e0054923. doi: 10.1128/spectrum.00549-23.
is an opportunistic pathogen causing serious nosocomial infections. Knowledge about the population structure and diversity of healthcare-associated from a genomic standpoint remains limited. Here, we characterized the phylogenetic relationships and genomic characteristics of 20 . isolates recovered from bloodstream infections at the Dartmouth-Hitchcock Medical Center, New Hampshire, USA from 2017 to 2021. Results revealed a diverse population consisting of 15 sequence types (STs) that together harbored 10 variants of the intrinsic beta-lactamase gene , conferring resistance to penicillins. Similar sets of antimicrobial resistance (AMR) determinants reside in multiple distinct lineages, with no one lineage dominating the local population. To place the New Hampshire in a broader context, we compared them to 304 publicly available genomes of clinical isolates from 18 countries. This global clinical population is represented by over 65 STs that together harbored resistance genes against 14 antimicrobial classes, including eight variants. Three dominant STs in the global population (ST2, ST176, ST199) circulate across multiple countries and were also present in the New Hampshire population. The global population is genetically diverse, but there is evidence for broad dissemination of a few lineages carrying distinct set of AMR determinants. Our findings reveal the clinical diversity of and its importance in surveillance efforts aimed at monitoring the evolution of this drug-resistant nosocomial pathogen. IMPORTANCE The opportunistic pathogen has been increasingly implicated in patient morbidity and mortality worldwide, including several outbreaks in healthcare settings. The emergence and spread of antimicrobial resistant strains exacerbate the disease burden caused by this species. Our study showed that clinical is phylogenetically diverse, harboring various antimicrobial resistance determinants and variants. Understanding the genomic and population structure of is important for international initiatives and local epidemiological efforts for surveillance and control of drug-resistant .
是一种引起严重医院感染的机会致病菌。从基因组角度对医疗保健相关的该菌的种群结构和多样性的了解仍然有限。在此,我们对20株从美国新罕布什尔州达特茅斯 - 希区柯克医疗中心2017年至2021年血液感染中分离出的该菌进行了系统发育关系和基因组特征分析。结果显示,该菌种群多样,由15种序列类型(STs)组成,共携带10种固有β - 内酰胺酶基因变体,赋予对青霉素的抗性。相似的抗菌耐药性(AMR)决定簇存在于多个不同谱系中,没有一个谱系在当地种群中占主导地位。为了将新罕布什尔州的该菌置于更广泛的背景下,我们将它们与来自18个国家的304个公开可用的临床分离株基因组进行了比较。这个全球临床该菌种群由超过65种STs代表,共携带针对14种抗菌药物类别的抗性基因,包括8种该菌变体。全球种群中的三个优势STs(ST2、ST176、ST199)在多个国家传播,也存在于新罕布什尔州种群中。全球该菌种群在基因上是多样的,但有证据表明少数携带不同AMR决定簇的谱系广泛传播。我们的研究结果揭示了该菌的临床多样性及其在监测这种耐药医院病原体进化的监测工作中的重要性。重要性:这种机会致病菌在全球范围内越来越多地与患者的发病和死亡相关,包括在医疗环境中的几次暴发。抗菌耐药菌株的出现和传播加剧了该菌种引起的疾病负担。我们的研究表明,临床该菌在系统发育上是多样的,携带各种抗菌耐药决定簇和该菌变体。了解该菌的基因组和种群结构对于监测和控制耐药该菌的国际倡议和地方流行病学工作很重要。