Dept of Chemistry and Chemical Biology, Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Dept of Chemistry and Chemical Biology, Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY, 12180, USA.
Curr Opin Struct Biol. 2023 Dec;83:102703. doi: 10.1016/j.sbi.2023.102703. Epub 2023 Sep 28.
Biomolecules exhibit dynamic behavior that single-state models of their structures cannot fully capture. We review some recent advances for investigating multiple conformations of biomolecules, including experimental methods, molecular dynamics simulations, and machine learning. We also address the challenges associated with representing single- and multiple-state models in data archives, with a particular focus on NMR structures. Establishing standardized representations and annotations will facilitate effective communication and understanding of these complex models to the broader scientific community.
生物分子表现出动态行为,其结构的单态模型无法完全捕捉到这些行为。我们回顾了一些研究生物分子多种构象的最新进展,包括实验方法、分子动力学模拟和机器学习。我们还讨论了在数据档案中表示单态和多态模型所面临的挑战,特别关注 NMR 结构。建立标准化的表示和注释将有助于更广泛的科学界有效沟通和理解这些复杂模型。