Department of Microbiology, University of Georgia, Athens, Georgia, USA.
J Bacteriol. 2024 Apr 18;206(4):e0004224. doi: 10.1128/jb.00042-24. Epub 2024 Apr 2.
In the absence of the RidA deaminase results in the accumulation of the reactive enamine 2-aminoacrylate (2AA). The resulting 2AA stress impacts metabolism and prevents growth in some conditions by inactivating a specific target pyridoxal 5'-phosphate (PLP)-dependent enzyme(s). The detrimental effects of 2AA stress can be overcome by changing the sensitivity of a critical target enzyme or modifying flux in one or more nodes in the metabolic network. The catabolic L-alanine racemase DadX is a target of 2AA, which explains the inability of an strain to use L-alanine as the sole nitrogen source. Spontaneous mutations that suppressed the growth defect of the strain were identified as lesions in which encodes GTP cyclohydrolase and catalyzes the first step of tetrahydrofolate (THF) synthesis. The data here show that THF limitation resulting from a lesion, or inhibition of dihydrofolate reductase (FolA) by trimethoprim, decreases the 2AA generated from endogenous serine. The data are consistent with an increased level of threonine, resulting from low folate levels, decreasing 2AA stress.IMPORTANCERidA is an enamine deaminase that has been characterized as preventing the 2-aminoacrylate (2AA) stress. In the absence of RidA, 2AA accumulates and damages various cellular enzymes. Much of the work describing the 2AA stress system has depended on the exogenous addition of serine to increase the production of the enamine stressor. The work herein focuses on understanding the effect of 2AA stress generated from endogenous serine pools. As such, this work describes the consequences of a subtle level of stress that nonetheless compromises growth in at least two conditions. Describing mechanisms that alter the physiological consequences of 2AA stress increases our understanding of endogenous metabolic stress and how the robustness of the metabolic network allows perturbations to be modulated.
在 RidA 脱氨酶缺失的情况下,反应性烯胺 2-氨基丙烯酸(2AA)积累。在某些条件下,由此产生的 2AA 应激会影响代谢并阻止生长,方法是使特定的靶标吡哆醛 5'-磷酸(PLP)依赖性酶失活。通过改变关键靶标酶的敏感性或修饰代谢网络中的一个或多个节点中的通量,可以克服 2AA 应激的有害影响。分解代谢的 L-丙氨酸外消旋酶 DadX 是 2AA 的靶标,这解释了 菌株不能将 L-丙氨酸用作唯一氮源的原因。鉴定出的能够抑制 菌株生长缺陷的自发突变是编码鸟苷三磷酸环化酶并催化四氢叶酸(THF)合成第一步的 突变。这里的数据表明,由 突变引起的 THF 限制,或磺胺甲恶唑抑制二氢叶酸还原酶(FolA),会降低源自内源性丝氨酸的 2AA。数据与由于低叶酸水平导致的苏氨酸水平升高一致,从而降低 2AA 应激。重要性 RidA 是一种烯胺脱氨酶,其特征在于防止 2-氨基丙烯酸(2AA)应激。在 RidA 缺失的情况下,2AA 会积累并损害各种细胞酶。描述 2AA 应激系统的大部分工作都依赖于外源添加丝氨酸来增加烯胺应激物的产生。本文的工作重点是了解源自内源性丝氨酸池的 2AA 应激的影响。因此,这项工作描述了尽管至少在两种情况下会损害生长,但仍会产生微妙水平的应激的后果。描述改变 2AA 应激生理后果的机制可以提高我们对内源性代谢应激的理解,以及代谢网络的稳健性如何允许对扰动进行调节。