Department of Intensive Care Medicine, Tengzhou Central People's Hospital, Tengzhou, China.
Department of Nutriology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China.
Sci Rep. 2024 Apr 15;14(1):8711. doi: 10.1038/s41598-024-59205-1.
The etiopathogenesis of severe acute pancreatitis (SAP) remains poorly understood. We aim to investigate the role of immune cells Infiltration Characteristics during SAP progression. Gene expression profiles of the GSE194331 dataset were retrieved from the GEO. Lasso regression and random forest algorithms were employed to select feature genes from genes related to SAP progression and immune responses. CIBERSORT was utilized to estimate differences in immune cell types and proportions and the relationship between immune cells and gene expression. We performed pathway enrichment analysis using GSEA to examine disparities in KEGG signaling pathways when comparing the two groups. Additionally, CMap analysis was executed to identify prospective small molecular compounds. The three hub genes (CBLB, JADE2, RNF144A) were identified that can predict SAP progression. Analysis of CIBERSORT and TISIDB databases has shown that there are significant differences in immune cell expression levels between the normal and SAP groups, and three hub genes (CBLB, JADE2, RNF144A) were highly correlated with multiple immune cells, regulating the characteristics of immune cell infiltration in the microenvironment. Finally, drug prediction through the Connectivity Map database suggested that compounds such as Entecavir, KU-0063794, Y-27632, and Antipyrine have certain effects as potential targeted drugs for the treatment of SAP. CBLB, JADE2, and RNF144A are hub genes in SAP, potentially playing important roles in SAP progression. This finding further broadens the understanding of the etiopathogenesis of SAP and provides a feasible basis for future research on diagnostic and immunotherapeutic targets for SAP.
严重急性胰腺炎(SAP)的发病机制仍不清楚。我们旨在研究免疫细胞浸润特征在 SAP 进展中的作用。从 GEO 中检索到与 SAP 进展和免疫反应相关的基因的 GSE194331 数据集的基因表达谱。使用 Lasso 回归和随机森林算法从基因中选择特征基因。使用 CIBERSORT 估计免疫细胞类型和比例的差异,以及免疫细胞与基因表达之间的关系。我们使用 GSEA 进行通路富集分析,以检查两组之间 KEGG 信号通路的差异。此外,还执行了 CMap 分析以识别有前途的小分子化合物。确定了三个可以预测 SAP 进展的枢纽基因(CBLB、JADE2、RNF144A)。CIBERSORT 和 TISIDB 数据库的分析表明,正常组和 SAP 组之间免疫细胞表达水平存在显著差异,三个枢纽基因(CBLB、JADE2、RNF144A)与多种免疫细胞高度相关,调节微环境中免疫细胞浸润的特征。最后,通过 Connectivity Map 数据库进行药物预测表明,恩替卡韦、KU-0063794、Y-27632 和安替比林等化合物可能具有一定的效果,作为治疗 SAP 的潜在靶向药物。CBLB、JADE2 和 RNF144A 是 SAP 的枢纽基因,可能在 SAP 进展中发挥重要作用。这一发现进一步拓宽了对 SAP 发病机制的认识,并为未来 SAP 的诊断和免疫治疗靶点的研究提供了可行的基础。