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从罗勒和茯苓中提取的生物活性化合物:一种基于计算方法的新型天然失眠治疗化合物。

Bioactive compounds from Ocimum tenuiflorum and Poria cocos: A novel natural Compound for insomnia treatment based on A computational approach.

机构信息

Department of Community Public Health, School of Public Health, Walailak University, Tha Sala District, Nakhon Si Thammarat, 80160, Thailand; Excellent Centre of Dengue and Community Public Health (EC for DACH), Walailak University, Tha Sala District, Nakhon Si Thammarat, 80160, Thailand.

Department of Medical Technology, School of Allied Health Sciences, Walailak University, Tha Sala District, Nakhon Si Thammarat, 80160, Thailand; Research Excellence Center for Innovation and Health Products, Walailak University, Tha Sala, Nakhon Si Thammarat, 80161, Thailand.

出版信息

Comput Biol Med. 2024 Jun;175:108491. doi: 10.1016/j.compbiomed.2024.108491. Epub 2024 Apr 16.

Abstract

Insomnia, a widespread public health issue, is associated with substantial distress and daytime functionality impairments and can predispose to depression and cardiovascular disease. Cognitive Behavioral Anti-insomnia therapies including benzodiazepines often face limitations due to patient adherence or potential adverse effects. This study focused on identifying novel bioactive compounds from medicinal plants, aiming to discover and develop new therapeutic agents with low risk-to-benefit ratios using computational drug discovery methods. Through a systematic framework involving compound library preparation, evaluation of drug-likeness and pharmacokinetics, toxicity prediction, molecular docking, and molecular dynamic simulations, two natural compounds such as 2-(4-hydroxy-3-methoxyphenyl)-8-methoxy-6-prop-2-enyl-3,4-dihydro-2H-chromen-3-ol from Ocimum tenuiflorum and 7-(2-hydroxypropan-2-yl)-1,4a-dimethyl-9-oxo-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid from Poria cocos exhibited high binding affinity with orexin receptor type 1 (OX1R) and type 2 (OX2R), surpassing commercial drugs used in insomnia treatment. Additionally, they showed interactions with critical amino acid residues within the receptors that play crucial roles in competitive inhibitor activity, like commercial drugs such as Suvorexant, Lemborexant, and Daridorexant. Further, molecular dynamics simulations of the protein-ligand complexes under conditions that mimic the in vivo environment revealed both compounds' sustained and robust interactions with the OX1R and OX2R, reinforcing their potential as effective therapeutic candidates. Furthermore, upon evaluating both compounds' drug-likeness, pharmacokinetics, and toxicity profiles, it was discerned that they displayed considerable drug-like properties and favorable pharmacokinetics, along with diminished toxicity. The research provides a solid foundation for further exploring and validating these compounds as potential anti-insomnia therapeutics.

摘要

失眠是一种普遍存在的公众健康问题,与大量痛苦和白天功能障碍有关,并可能导致抑郁和心血管疾病。认知行为抗失眠疗法,包括苯二氮䓬类药物,由于患者的依从性或潜在的不良反应,往往存在局限性。本研究专注于从药用植物中寻找新的生物活性化合物,旨在使用计算药物发现方法发现和开发具有低风险-效益比的新型治疗剂。通过一个系统的框架,包括化合物库的准备、药物相似性和药代动力学的评估、毒性预测、分子对接和分子动力学模拟,从罗勒中提取的两种天然化合物,2-(4-羟基-3-甲氧基苯基)-8-甲氧基-6-丙烯基-3,4-二氢-2H-色烯-3-醇和从茯苓中提取的 7-(2-羟基丙-2-基)-1,4a-二甲基-9-氧代-3,4,10,10a-四氢-2H-菲啶-1-羧酸,与食欲素受体 1 (OX1R) 和 2 (OX2R) 具有高结合亲和力,超过了用于失眠治疗的商业药物。此外,它们与受体中关键的氨基酸残基相互作用,这些残基在竞争性抑制剂活性中起着关键作用,就像商业药物如苏沃雷生、仑贝雷生和达力雷生一样。此外,在模拟体内环境条件下的蛋白质-配体复合物的分子动力学模拟表明,这两种化合物与 OX1R 和 OX2R 持续而稳定地相互作用,这增强了它们作为有效治疗候选物的潜力。此外,在评估这两种化合物的药物相似性、药代动力学和毒性特征后,发现它们具有相当的药物特性和良好的药代动力学特性,同时毒性降低。该研究为进一步探索和验证这些化合物作为潜在的抗失眠治疗药物提供了坚实的基础。

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