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分子氢作为氢键质子受体:从质子化甜菜碱标记到最弱氢键

Molecular Hydrogen Acts as a Hydrogen Bond Proton Acceptor: From Protonated Betaine Tagging to the Weakest Hydrogen Bond.

作者信息

Achevski Blagoj, Pejov Ljupcho

机构信息

Institute of Chemistry, Faculty of Natural Sciences and Mathematics, SS Cyril and Methodius University, PO Box 162, 1000 Skopje, Republic of North Macedonia.

Faculty of Pharmacy, SS Cyril and Methodius University, 1000 Skopje, Republic of North Macedonia.

出版信息

J Phys Chem A. 2024 May 23;128(20):3968-3981. doi: 10.1021/acs.jpca.4c01331. Epub 2024 May 8.

Abstract

In an attempt to gain further insights into the intermolecular interactions implied by Rizzo's group's cautionary tale related to molecular tagging in infrared multiple photon dissociation (IRMPD) spectroscopy with molecular messengers [Masson, A. . 2015, 143, 104313], in the present study, we provide an in-depth analysis of the noncovalent interaction between the molecular hydrogen and protonated betaine molecule in the gas phase. We aim to shed some new light on the fundamental issues concerning the wide diapason of hydrogen-bonding-type intermolecular interactions, with a wide variety of proton acceptors. We demonstrate that in the course of tagging the protonated betaine with molecular hydrogen from the OH group side, it is the σ bond of molecular hydrogen that plays the role of hydrogen-bonding proton acceptor. The tagging thus induces a small yet significant red shift of the protonated betaine O-H stretching mode. We investigate the performance of a wide range of density functional theory (DFT) functionals for the calculation of anharmonic vibrational frequency shifts of the studied system, which are essential for the correct interpretation of the experimental IRMPD data. For an accurate prediction of the OH stretching frequency shifts, specifically designed functionals such as Handy's group HCTH/407 should be applied. The empirical dispersion correction enhances the systematic overestimation of the anharmonic frequency shift, characteristic of the most widely used DFT functionals. Combining the full-wave function approach with the charge field perturbation and natural bond orbital (NBO) deletion analyses, we demonstrate that the frequency shift in the OH-tagged structure is governed by the σ → σ* intermolecular charge transfer. This interaction stabilizes the OH-tagged dimer as well, in contrast to the dipole-quadrupole electrostatic interaction energy term. Topological analysis of the electron density reveals the presence of an intermolecular bond critical point with a positive value of the density Laplacian very close to the lower limit for hydrogen bonds. NCI analyses demonstrate that the OH···H interaction is weaker than the intramolecular CH···O one within the protonated betaine molecule, with the through of reduced density gradient appearing at less negative sign(λ)·ρ values. Analyzing the O-H stretching vibrational potential with the second-generation absolutely localized molecular orbitals energy decomposition analysis (ALMO-EDA 2) revealed that in the case of betaineH(+) tagged from the OH group side, the permanent electrostatics (Δ), polarization (Δ), and charge-transfer (Δ) contributions to the total intermolecular interaction energy contribute favorably to the weak hydrogen bond formation and to the red shift of the fundamental O-H stretching frequency, the Δ contribution being the most significant in the last context. The Pauli repulsion term, on the other hand, favors an O-H stretching frequency blue shift as a consequence of the vibrational confinement effects.

摘要

为了进一步深入了解里佐小组关于在红外多光子解离(IRMPD)光谱中使用分子信使进行分子标记的警示故事所暗示的分子间相互作用[马森,A. 2015,143,104313],在本研究中,我们对气相中分子氢与质子化甜菜碱分子之间的非共价相互作用进行了深入分析。我们旨在为有关氢键型分子间相互作用广泛范围的基本问题提供一些新的见解,这些相互作用涉及多种质子受体。我们证明,在从OH基团一侧用分子氢标记质子化甜菜碱的过程中,分子氢的σ键起到了氢键质子受体的作用。这种标记因此导致质子化甜菜碱O - H伸缩模式出现小但显著的红移。我们研究了广泛的密度泛函理论(DFT)泛函在计算所研究体系的非谐振动频率位移方面的性能,这对于正确解释实验IRMPD数据至关重要。为了准确预测OH伸缩频率位移,应应用专门设计的泛函,如汉迪小组的HCTH/407。经验色散校正增强了最广泛使用的DFT泛函所特有的非谐频率位移的系统性高估。结合全波函数方法与电荷场微扰和自然键轨道(NBO)删除分析,我们证明OH标记结构中的频率位移由σ→σ*分子间电荷转移控制。与偶极 - 四极静电相互作用能项相反,这种相互作用也使OH标记的二聚体稳定。电子密度的拓扑分析揭示了分子间键临界点的存在,其密度拉普拉斯算子的值为正,非常接近氢键的下限。NCI分析表明,在质子化甜菜碱分子内,OH···H相互作用比分子内CH···O相互作用弱,密度降低梯度的穿透出现在较小的负号(λ)·ρ值处。用第二代绝对定域分子轨道能量分解分析(ALMO - EDA 2)分析O - H伸缩振动势表明,在从OH基团一侧标记甜菜碱H(+)的情况下,对总分子间相互作用能的永久静电(Δ)、极化(Δ)和电荷转移(Δ)贡献对弱氢键形成和基本O - H伸缩频率的红移有有利贡献,在最后一种情况下,Δ贡献最为显著。另一方面,泡利排斥项由于振动限制效应有利于O - H伸缩频率蓝移。

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