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环状 RNA 环:基因组不稳定性的新型 RNA:DNA 相互作用。

CircR-loop: a novel RNA:DNA interaction on genome instability.

机构信息

Key Laboratory of Novel Targets and Drug Study for Neural Repair of Zhejiang Province, School of Medicine, Hangzhou City University, Hangzhou, Zhejiang, China.

Department of Clinical Medicine, Hangzhou City University, Hangzhou, Zhejiang, China.

出版信息

Cell Mol Biol Lett. 2024 Jun 14;29(1):89. doi: 10.1186/s11658-024-00606-5.

Abstract

CircR-loop, a recently unearthed regulatory mechanism situated at the crossroads of circular RNA and DNA interactions, constitute a subset of R-loop. This circR-loop have emerged as a crucial player in pivotal regulatory functions within both animal and plant systems. The journey into the realm of circR-loop commenced with their discovery within the human mitochondrial genome, where they serve as critical directors of mitochondrial DNA replication. In the plant kingdom, circR-loop wield influence over processes such as alternative splicing and centromere organization, impacting the intricacies of floral development and genome stability, respectively. Their significance extends to the animal domain, where circR-loop has captured attention for their roles in cancer-related phenomena, exerting control over transcription, chromatin architecture, and orchestrating responses to DNA damage. Moreover, their involvement in nuclear export anomalies further underscores their prominence in cellular regulation. This article summarizes the important regulatory mechanisms and physiological roles of circR-loop in plants and animals, and offers a comprehensive exploration of the methodologies employed for the identification, characterization, and functional analysis of circR-loop, underscoring the pressing need for innovative approaches that can effectively distinguish them from their linear RNA counterparts while elucidating their precise functions. Lastly, the article sheds light on the challenges and opportunities that lie ahead in the field of circR-loop research, emphasizing the vital importance of continued investigations to uncover their regulatory roles and potential applications in the realm of biology. In summary, circR-loop represents a captivating and novel regulatory mechanism with broad-reaching implications spanning the realms of genetics, epigenetics, and disease biology. Their exploration opens new avenues for comprehending gene regulation and holds significant promise for future therapeutic interventions.

摘要

circR-loop 是一种新发现的调控机制,位于环状 RNA 和 DNA 相互作用的交叉点,是 R-loop 的一个子集。circR-loop 在动物和植物系统的关键调控功能中发挥着重要作用。circR-loop 的研究始于在人类线粒体基因组中发现它们,它们是线粒体 DNA 复制的关键调控因子。在植物王国中,circR-loop 影响着可变剪接和着丝粒组织等过程,分别影响着花发育和基因组稳定性的复杂性。它们的重要性延伸到动物领域,circR-loop 在癌症相关现象中发挥作用,控制转录、染色质结构,并协调对 DNA 损伤的反应。此外,它们在核输出异常中的参与进一步突显了它们在细胞调控中的突出地位。本文总结了 circR-loop 在动植物中的重要调控机制和生理作用,并全面探讨了鉴定、表征和功能分析 circR-loop 所采用的方法,强调了迫切需要创新方法,以有效地将它们与线性 RNA 区分开来,并阐明其精确功能。最后,本文探讨了 circR-loop 研究领域面临的挑战和机遇,强调了继续研究以揭示其调控作用及其在生物学领域的潜在应用的重要性。总之,circR-loop 是一种具有广泛意义的新调控机制,涉及遗传学、表观遗传学和疾病生物学等领域。对其的探索为理解基因调控开辟了新途径,并为未来的治疗干预提供了巨大的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b7f/11177446/178ccc6cc4b9/11658_2024_606_Fig1_HTML.jpg

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