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关于《国际原核生物命名法规》第 10 节修正提案的评论,涉及到候选名称。

Commentary on the proposed Section 10 amendments to the International Code of Nomenclature of Prokaryotes regarding Candidatus names.

机构信息

Department of Microbiology, University of Georgia, Athens GA USA.

Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa.

出版信息

Syst Appl Microbiol. 2024 Jul;47(4):126524. doi: 10.1016/j.syapm.2024.126524. Epub 2024 Jun 13.

Abstract

Amendments were proposed to the International Code of Nomenclature of Prokaryotes (ICNP) in January [Arahal et al. (2024) Int. J Syst. Evol. Microbiol. 74: 006188] that would cause major changes in the treatment of Candidatus names. The amendments introduce Section 10 to name taxa whose names cannot be validly published under the ICNP because of the absence of type strains. This section creates a parallel 'pro-nomenclature' and formalizes alternative material which could serve as nomenclatural types. When conspecific isolates of taxa with Candidatus names are deposited in culture collections as type strains, the names can be validly published, and it is required that the same Candidatus name be used. While the amendments are promoted to provide stable names and rules of nomenclature for uncultivated taxa, the system is deeply flawed. It removes the permanent association between names and types, which will make the meaning of names imprecise and ambiguous. It creates 'pro-nomenclature', which is confusing and unnecessary. Since many taxa which cannot be validly named under the ICNP can already be named under the SeqCode, it duplicates and creates overlap with an established nomenclatural system without providing tangible benefits. As the SeqCode recognizes names formed under the ICNP, the ICNP should recognize names formed under the SeqCode as they have done for the Cyanobacteria named under the International Code of Nomenclature for algae, fungi and plants (ICN). For these reasons, we urge the members of the International Committee of Systematics of Prokaryotes (ICSP) to reject these amendments.

摘要

对《国际原核生物命名法规(ICNP)》的修订提案于[Arahal 等人,2024 年,国际系统与进化微生物学杂志,74:006188] 年 1 月提出,这将导致对“候选名称”的处理方式发生重大变化。这些修订提案引入了第 10 节,以命名那些由于缺乏模式菌株而无法根据 ICNP 有效发表名称的分类单元。这一节创建了一个平行的“预命名法”,并正式确定了可作为命名类型的替代材料。当具有候选名称的分类单元的同物种分离株作为模式菌株被保藏在培养物保藏中心时,这些名称可以被有效发表,并且需要使用相同的候选名称。虽然这些修订提案旨在为未培养的分类单元提供稳定的名称和命名规则,但该系统存在严重缺陷。它取消了名称和类型之间的永久关联,这将使名称的含义不准确和模糊。它创建了“预命名法”,这是混乱和不必要的。由于许多无法根据 ICNP 有效命名的分类单元已经可以根据 SeqCode 命名,因此它复制并与已建立的命名系统重叠,而没有提供实际的好处。由于 SeqCode 承认根据 ICNP 形成的名称,ICNP 应该承认根据 SeqCode 形成的名称,就像它们已经为根据藻类、真菌和植物国际命名法规(ICN)命名的蓝细菌所做的那样。基于这些原因,我们敦促国际原核生物系统学委员会(ICSP)的成员拒绝这些修订提案。

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