Fitzgerald James E, Soloviov Dmytro, Cai Yong Q, Heberle Frederick A, Ishikawa Daisuke, Baron Alfred Q R, Bolmatov Dima, Zhernenkov Mikhail, Lyman Edward R
Department of Physics & Astronomy, University of Delaware, Newark, Delaware.
European Molecular Biology Laboratory, Hamburg Outstation c/o DESY, Hamburg, Germany; Institute for Safety Problems of Nuclear Power Plants of the Ukrainian NAS, Kyiv, Ukraine.
Biophys J. 2024 Dec 3;123(23):4042-4049. doi: 10.1016/j.bpj.2024.10.017. Epub 2024 Nov 5.
Experimental studies of collective dynamics in lipid bilayers have been challenging due to the energy resolution required to observe these low-energy phonon-like modes. However, inelastic x-ray scattering (IXS) measurements-a technique for probing vibrations in soft and biological materials-are now possible with sub-meV resolution, permitting direct observation of low-energy, phonon-like modes in lipid membranes. Here, IXS measurements with sub-meV energy resolution reveal a low-energy optic-like phonon mode at roughly 3 meV in the liquid-ordered (L) and liquid-disordered phases of a ternary lipid mixture. This mode is only observed experimentally at momentum transfers greater than 5 nm in the L system. A similar gapped mode is also observed in all-atom molecular dynamics (MD) simulations of the same mixture, indicating that the simulations accurately represent the fast, collective dynamics in the L phase. Its optical nature and the Q range of the gap together suggest that the observed mode is due to the coupled motion of cholesterol-lipid pairs, separated by several hydrocarbon chains within the membrane plane. Analysis of the simulations provides molecular insight into the origin of the mode in transient, nanoscale substructures of hexagonally packed hydrocarbon chains. This nanoscale hexagonal packing was previously reported based on MD simulations and, later, by NMR measurements. Here, however, the integration of IXS and MD simulations identifies a new signature of the L substructure in the collective lipid dynamics, thanks to the recent confluence of IXS sensitivity and MD simulation capabilities.
由于观测这些低能类声子模式所需的能量分辨率,脂质双层中集体动力学的实验研究一直具有挑战性。然而,非弹性X射线散射(IXS)测量——一种探测软材料和生物材料中振动的技术——现在已能实现亚毫电子伏特分辨率,从而可以直接观测脂质膜中的低能类声子模式。在此,具有亚毫电子伏特能量分辨率的IXS测量揭示了在三元脂质混合物的液相有序(L)相和液相无序相中,在约3毫电子伏特处存在一种低能类光学声子模式。这种模式仅在L系统中动量转移大于5纳米时通过实验观测到。在相同混合物的全原子分子动力学(MD)模拟中也观察到了类似的带隙模式,这表明该模拟准确地再现了L相中的快速集体动力学。其光学性质和带隙的Q范围共同表明,观测到的模式是由于胆固醇 - 脂质对的耦合运动引起的,它们在膜平面内被几条碳氢链隔开。对模拟的分析为该模式在六方堆积碳氢链的瞬态纳米级子结构中的起源提供了分子层面的见解。这种纳米级六方堆积此前已基于MD模拟以及后来的核磁共振测量报道过。然而在此,IXS和MD模拟的结合确定了L子结构在脂质集体动力学中的一个新特征,这得益于IXS灵敏度和MD模拟能力最近的融合。