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绿纹夜蛾(鳞翅目:草螟科:绢野螟亚科)的染色体水平基因组组装

Chromosome-level genome assembly of Parotis chlorochroalis (Lepidoptera: Crambidae: Spilomelinae).

作者信息

Xiong Mei, Cheng Rui, He Bo, Wu Chun-Sheng, Zhu Chao-Dong, Luo Arong, Zhou Qing-Song

机构信息

State Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.

University of Chinese Academy of Sciences, Beijing, 100049, China.

出版信息

Sci Data. 2025 May 6;12(1):743. doi: 10.1038/s41597-025-05053-1.

Abstract

Parotis Hübner, 1831 is a genus within the family Crambidae, which is recognized as one of the most diverse families of Lepidoptera. Species within the genus Parotis can be readily distinguished from other closely related genera by their distinctive green or yellow-green body coloration. However, the genus Parotis has received relatively limited research attention, and the scarcity of genome-wide molecular resources has impeded a more comprehensive understanding of its evolution, adaptation, and phylogenetic relationships. This study reports the first genome assembly for Parotis chlorochroalis (Hampson, 1912), generated through PacBio Hi-Fi and Hi-C sequencing technologies. The assembled genome has a size of 456.23 Mb, comprising 31 chromosomes. Approximately 181.82 Mb, which constitutes 39.85% of the genome, has been identified as repetitive sequences. The genome assembly includes 16,299 protein-coding genes, of which 94.82% have been functionally annotated. This chromosome-level genome assembly not only advance understanding of P. chlorochroalis but also has the potential to facilitate genomic studies of other lepidopteran species.

摘要

Parotis Hübner,1831 是草螟科中的一个属,草螟科被认为是鳞翅目中最多样化的科之一。Parotis 属内的物种可以通过其独特的绿色或黄绿色体色与其他近缘属很容易地区分开来。然而,Parotis 属受到的研究关注相对有限,全基因组分子资源的稀缺阻碍了对其进化、适应性和系统发育关系的更全面理解。本研究报告了通过 PacBio Hi-Fi 和 Hi-C 测序技术生成的 Parotis chlorochroalis(Hampson,1912)的首个基因组组装。组装后的基因组大小为 456.23 Mb,由 31 条染色体组成。约 181.82 Mb(占基因组的 39.85%)被鉴定为重复序列。基因组组装包含 16,299 个蛋白质编码基因,其中 94.82% 已进行功能注释。这种染色体水平的基因组组装不仅增进了对绿褐 Parotis 的了解,还有助于促进其他鳞翅目物种的基因组研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8381/12056075/0e13b4e7c19f/41597_2025_5053_Fig1_HTML.jpg

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