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独特的结构特征决定了嗜碱乳球菌中CYP152脂肪酸脱羧酶的脱羧活性。

Unique structural features define the decarboxylation activity of a CYP152 fatty acid decarboxylase from Lacicoccus alkaliphilus.

作者信息

Phaisan Suppalak, Phintha Aisaraphon, Trisrivirat Duangthip, Lawan Narin, Sucharitakul Jeerus, Charoenpol Ailada, Watthaisong Pratchaya, Tanaka Hideaki, Kurisu Genji, Chaiyen Pimchai

机构信息

School of Biomolecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology (VISTEC), Rayong, Thailand.

Faculty of Science, Department of Chemistry, Chiang Mai University, Chiang Mai, Thailand.

出版信息

J Biol Chem. 2025 Jul;301(7):110397. doi: 10.1016/j.jbc.2025.110397. Epub 2025 Jun 19.

Abstract

Cytochrome P450 CYP152s catalyze decarboxylation of fatty acids to generate terminal alkenes, valuable compounds for various industries. Here, we identified, overexpressed, and characterized a new CYP152 enzyme from Lacicoccus alkaliphilus (OleT) and compared its biophysical and biochemical properties with the well-studied OleT from Jeotgalicoccus sp. 8456. Improved expression protocols gave the highest yields of CYP152 holoenzymes reported to date. OleT exhibits twice the catalytic turnover number of OleT when using hexadecanoic acid and HO as substrates in 10% (v/v) ethanol (EtOH). The X-ray structure of OleT in complex with icosanoic acid revealed a unique flipped heme and a substrate tunnel configuration which are different than those of other CYP152 decarboxylases. Molecular dynamics simulations revealed that in the presence of EtOH, OleT displays structural dynamics which maintain structural interactions better than those of OleT. As I178 in OleT (equivalent to L176 in OleT) shows close interactions with its substrate during simulations, I178L of OleT and L176I of OleT variants were constructed and investigated for their activities. While L176I in OleT caused a significant loss of activity, I178L of OleT had activities that were equivalent to or greater than those of the wild-type enzyme, suggesting that overall scaffold of OleT is more amenable to mutation than OleT. Stopped-flow investigations of OleT reactions indicated that EtOH increases the rate constant of Compound I formation. We also identified a new redox partner system, ferredoxin and ferredoxin reductase that can function as effective electron donors for both in vitro and in vivo systems of CYP152s.

摘要

细胞色素P450 CYP152s催化脂肪酸脱羧生成末端烯烃,这些烯烃是各种工业的重要化合物。在此,我们从嗜碱乳球菌中鉴定、过表达并表征了一种新的CYP152酶(OleT),并将其生物物理和生化特性与已深入研究的来自嗜盐放线菌8456的OleT进行了比较。改进的表达方案使CYP152全酶的产量达到了迄今为止报道的最高水平。当以十六烷酸和HO为底物在10%(v/v)乙醇(EtOH)中时,OleT的催化周转数是OleT的两倍。与二十烷酸结合的OleT的X射线结构显示出独特的翻转血红素和底物通道构型,这与其他CYP152脱羧酶不同。分子动力学模拟表明,在乙醇存在下,OleT表现出结构动力学,其结构相互作用比OleT更好。由于在模拟过程中OleT中的I178(相当于OleT中的L176)与其底物显示出紧密相互作用,构建了OleT的I178L和OleT变体的L176I,并研究了它们的活性。虽然OleT中的L176I导致活性显著丧失,但OleT的I178L的活性与野生型酶相当或更高,这表明OleT的整体支架比OleT更易于突变。对OleT反应的停流研究表明,乙醇增加了化合物I形成的速率常数。我们还鉴定了一种新的氧化还原伙伴系统,铁氧还蛋白和铁氧还蛋白还原酶,它们可以作为CYP152s体外和体内系统的有效电子供体。

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