Barchi Yasma, Oviedo-Hernandez Florencia, Chaïb Amel, Philippe Cécile, Claisse Olivier, Cambillau Christian, Goulet Adeline, Marrec Claire Le
Université Bordeaux, INRAE, Bordeaux INP, Bordeaux Sciences Agro, UMR1366 Œnologie, F-33140, Villenave d'Ornon, France.
School of Microbiology & APC Microbiome Ireland, University College Cork, Cork, Ireland.
Microbiol Spectr. 2025 Sep 2;13(9):e0258824. doi: 10.1128/spectrum.02588-24. Epub 2025 Aug 12.
is the predominant lactic acid bacteria species in wine, where it performs the malolactic fermentation, which helps to secure and preserve wine quality. Here, we describe the morphological, biological, and genomic characterization of siphophage Krappator X, a strictly lytic phage that was previously isolated from Merlot wines. Several aspects of the life cycle of the phage were investigated using the sensitive strain IOEBS277 under optimal growth conditions. X has a large burst size (149 Plaque Forming unit [PFU] per infected cell) and targets industrially relevant strains of used for production of wines. X also shows lytic activity against its host in red and white grape juice media. The phage genome consists of 41,633 nucleotides. Structure prediction of the viral adhesion devices reveals elongated multi-domain machinery containing carbohydrate-binding modules likely involved in host recognition and binding. Genome-based phylogeny revealed that X has less than 30% intergenomic similarities with its most similar phages and represents a new species in a yet unassigned genus, for which we propose the name « Krappavirus . Aiming to expand the available collection of genomes in this genus, we sequenced two independently isolated phage homologs from Merlot wines. Modular protein evolution may play a role in the diversification of this specific phage lineage, and naturally occurring domain combinations were found in three crucial proteins of known function: the small terminase subunit, the endolysin, and the replisome organizer.IMPORTANCE is commonly used for wine and cider production. Characterizing strictly lytic oenophages, understanding their genetic relationships, and studying their interactions with various hosts are the necessary steps for preventing and controlling phage attacks that occur along the fermentation process.
是葡萄酒中占主导地位的乳酸菌物种,它进行苹果酸乳酸发酵,有助于确保和保持葡萄酒的品质。在此,我们描述了烈性噬菌体克拉帕托X的形态、生物学和基因组特征,该噬菌体先前从梅洛葡萄酒中分离得到。在最佳生长条件下,使用敏感菌株IOEBS277对噬菌体生命周期的几个方面进行了研究。X具有较大的爆发量(每个感染细胞产生149个噬菌斑形成单位[PFU]),并靶向用于葡萄酒生产的工业相关菌株。X在红葡萄汁和白葡萄汁培养基中对其宿主也表现出裂解活性。噬菌体基因组由41,633个核苷酸组成。病毒粘附装置的结构预测显示,其包含可能参与宿主识别和结合的碳水化合物结合模块的细长多结构域机制。基于基因组的系统发育分析表明,X与其最相似的噬菌体之间的基因组间相似性不到30%,代表了一个尚未分类的属中的一个新物种,我们为此提议将其命名为“克拉帕病毒”。为了扩大该属中可用的基因组集合,我们对从梅洛葡萄酒中独立分离的两个噬菌体同源物进行了测序。模块化蛋白质进化可能在这个特定噬菌体谱系的多样化中起作用,并且在三种已知功能的关键蛋白质中发现了天然存在的结构域组合:小末端酶亚基、溶菌酶和复制体组织者。重要性通常用于葡萄酒和苹果酒生产。表征严格裂解的嗜酒噬菌体、了解它们的遗传关系以及研究它们与各种宿主的相互作用是预防和控制发酵过程中发生的噬菌体攻击的必要步骤。