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转录组和单细胞测序背景下三阴性乳腺癌的免疫微环境与预后基因

Immune microenvironment and prognostic genes of triple-negative breast cancer in the context of transcriptome and single-cell sequencing.

作者信息

Huang Xiangqin, Chen Wei, Lin Zhiwu, Zhang Hui, Wang Ruijuan, Lin Cailing

机构信息

Department of Breast Surgery, Shengli Clinical Medical College of Fujian Medical University, Fuzhou, China.

Fujian Provincial Hospital, Fuzhou, China.

出版信息

Sci Rep. 2025 Aug 13;15(1):29614. doi: 10.1038/s41598-025-15157-8.

Abstract

Immune-related genes (IRGs) play a pivotal role in the tumor microenvironment of triple-negative breast cancer (TNBC). This study aimed to uncover novel prognostic markers for TNBC based on IRGs. Differential expression analysis, univariate Cox regression, and machine learning algorithms identified BPI, GPHA2, KIR3DL3, MASP1, RASGRP1, and SEMA4A as potential prognostic genes. A random survival forest (RSF) model was developed and subsequently validated, alongside the creation of a prognostic nomogram to assess gene diagnostic performance. Further, epithelial cells, fibroblasts, and T cells were recognized as the primary cell types through which RASGRP1 exerts its effects. Finally, an analysis of the immune microenvironment and drug predictions provided fresh insights for the treatment of TNBC.

摘要

免疫相关基因(IRGs)在三阴性乳腺癌(TNBC)的肿瘤微环境中起着关键作用。本研究旨在基于IRGs发现TNBC的新型预后标志物。差异表达分析、单变量Cox回归和机器学习算法确定BPI、GPHA2、KIR3DL3、MASP1、RASGRP1和SEMA4A为潜在的预后基因。开发并随后验证了随机生存森林(RSF)模型,同时创建了预后列线图以评估基因诊断性能。此外,上皮细胞、成纤维细胞和T细胞被确定为RASGRP1发挥作用的主要细胞类型。最后,对免疫微环境的分析和药物预测为TNBC的治疗提供了新的见解。

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