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新型昆虫病原细菌ALN 7.1和ALN 11.5的全基因组测序与生物合成基因簇分析

Whole-Genome Sequencing and Biosynthetic Gene Cluster Analysis of Novel Entomopathogenic Bacteria ALN 7.1 and ALN 11.5.

作者信息

Meesil Wipanee, Ardpairin Jiranun, Sharkey Liam K R, Pidot Sacha J, Vitta Apichat, Thanwisai Aunchalee

机构信息

Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok 65000, Thailand.

Department of Microbiology and Immunology, Doherty Institute, 792 Elizabeth Street, Melbourne 3000, Australia.

出版信息

Biology (Basel). 2025 Jul 22;14(8):905. doi: 10.3390/biology14080905.

Abstract

species are entomopathogenic bacteria that live in symbiosis with nematodes and produce a wide range of bioactive secondary metabolites. This study aimed to characterize the complete genomes and biosynthetic potential of two novel isolates, ALN7.1 and ALN11.5, recovered from collected in Northern Thailand. High-quality genome assemblies were generated, and phylogenomic comparisons confirmed that both isolates belonged to the recently described species . The assembled genomes were approximately 4.02 Mb in size, each comprising a single circular chromosome with a GC content of 44.6% and encoding ~3800 protein-coding sequences, consistent with the features observed in other members of the genus. Biosynthetic gene cluster (BGCs) prediction using antiSMASH identified 19 BGCs in ALN7.1 and 18 in ALN11.5, including known clusters for holomycin, pyrrolizixenamide, hydrogen cyanide, and gamexpeptide C, along with several uncharacterized clusters, suggesting unexplored metabolic potential. Comparative analyses highlighted conserved yet strain-specific BGC profiles, indicating possible diversification within the species. These results provide genomic insights into ALN7.1 and ALN11.5 and support their potential as valuable sources for the discovery of novel natural products and for future biotechnological applications.

摘要

某些物种是昆虫病原细菌,它们与线虫共生,并产生多种生物活性次生代谢产物。本研究旨在对从泰国北部采集的两种新分离株ALN7.1和ALN11.5的完整基因组和生物合成潜力进行表征。生成了高质量的基因组组装体,系统发育基因组比较证实这两种分离株都属于最近描述的物种。组装后的基因组大小约为4.02 Mb,每个基因组包含一条单一的环状染色体,GC含量为44.6%,编码约3800个蛋白质编码序列,这与该属其他成员观察到的特征一致。使用antiSMASH进行生物合成基因簇(BGC)预测,在ALN7.1中鉴定出19个BGC,在ALN11.5中鉴定出18个BGC,包括已知的全霉素、吡咯嗪酰胺、氰化氢和游戏肽C的基因簇,以及几个未表征的基因簇,这表明存在未开发的代谢潜力。比较分析突出了保守但菌株特异性的BGC图谱,表明该物种内可能存在多样化。这些结果提供了对ALN7.1和ALN11.5的基因组见解,并支持它们作为发现新型天然产物和未来生物技术应用的宝贵来源的潜力。

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