Suppr超能文献

SWISS-PROT蛋白质序列数据库及其新的补充数据库TREMBL。

The SWISS-PROT protein sequence data bank and its new supplement TREMBL.

作者信息

Bairoch A, Apweiler R

机构信息

Department of Medical Biochemistry, University of Geneva, Switzerland.

出版信息

Nucleic Acids Res. 1996 Jan 1;24(1):21-5. doi: 10.1093/nar/24.1.21.

Abstract

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc), a minimal level of redundancy and a high level of integration with other databases. Recent developments of the database include: an increase in the number and scope of model organisms; cross-references to seven additional databases; a variety of new documentation files; the creation of TREMBL, and unannotated supplement to SWISS-PROT. This supplement consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except CDS already included in SWISS-PROT.

摘要

SWISS-PROT是一个经过精心整理的蛋白质序列数据库,致力于提供高水平的注释(如蛋白质功能描述、结构域结构、翻译后修饰、变体等)、最低限度的冗余以及与其他数据库的高度整合。该数据库的近期发展包括:模式生物数量和范围的增加;与另外七个数据库的交叉引用;各种新的文档文件;创建了TREMBL,即SWISS-PROT的未注释补充数据库。该补充数据库由源自EMBL核苷酸序列数据库中所有编码序列(CDS)翻译的SWISS-PROT样格式条目组成,但不包括SWISS-PROT中已有的CDS。

相似文献

1
The SWISS-PROT protein sequence data bank and its new supplement TREMBL.
Nucleic Acids Res. 1996 Jan 1;24(1):21-5. doi: 10.1093/nar/24.1.21.
2
The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
Nucleic Acids Res. 1997 Jan 1;25(1):31-6. doi: 10.1093/nar/25.1.31.
3
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
Nucleic Acids Res. 1999 Jan 1;27(1):49-54. doi: 10.1093/nar/27.1.49.
4
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
Nucleic Acids Res. 1998 Jan 1;26(1):38-42. doi: 10.1093/nar/26.1.38.
5
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic Acids Res. 2000 Jan 1;28(1):45-8. doi: 10.1093/nar/28.1.45.
7
The role SWISS-PROT and TrEMBL play in the genome research environment.
J Biotechnol. 2000 Mar 31;78(3):221-34. doi: 10.1016/s0168-1656(00)00198-x.
8
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
Brief Bioinform. 2002 Sep;3(3):275-84. doi: 10.1093/bib/3.3.275.
9
The SWISS-PROT protein sequence data bank: current status.
Nucleic Acids Res. 1994 Sep;22(17):3578-80.
10
Glycosyltransferases in SWISS-PROT.
Glycoconj J. 1998 May;15(5):507-9. doi: 10.1023/a:1006991121281.

引用本文的文献

1
Exo-Tox: Identifying Exotoxins from secreted bacterial proteins.
BioData Min. 2025 Aug 8;18(1):52. doi: 10.1186/s13040-025-00469-2.
2
16S rRNA and Metagenomic Datasets of Gastrointestinal Microbiota in Fetal and 7-Day-Old Goat Kids.
Sci Data. 2025 Jul 15;12(1):1234. doi: 10.1038/s41597-025-05555-y.
3
Topology-driven negative sampling enhances generalizability in protein-protein interaction prediction.
Bioinformatics. 2025 May 6;41(5). doi: 10.1093/bioinformatics/btaf148.
4
The genome of the solitary bee Tetrapedia diversipes (Hymenoptera, Apidae).
G3 (Bethesda). 2025 Feb 5;15(2). doi: 10.1093/g3journal/jkae264.
8
Comparative transcriptomics of Venus flytrap (Dionaea muscipula) across stages of prey capture and digestion.
PLoS One. 2024 Aug 12;19(8):e0305117. doi: 10.1371/journal.pone.0305117. eCollection 2024.

本文引用的文献

1
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.
Trends Biochem Sci. 1994 Jun;19(6):258-60. doi: 10.1016/0968-0004(94)90153-8.
2
The HSSP database of protein structure-sequence alignments.
Nucleic Acids Res. 1994 Sep;22(17):3597-9.
3
The SWISS-PROT protein sequence data bank: current status.
Nucleic Acids Res. 1994 Sep;22(17):3578-80.
5
The European Bioinformatics Institute (EBI) databases.
Nucleic Acids Res. 1994 Sep;22(17):3445-9. doi: 10.1093/nar/22.17.3445.
6
Recognition of regulatory regions in genomic sequences.
J Biotechnol. 1994 Jun 30;35(2-3):273-80. doi: 10.1016/0168-1656(94)90041-8.
7
SubtiList: a relational database for the Bacillus subtilis genome.
Microbiology (Reading). 1995 Feb;141 ( Pt 2):261-8. doi: 10.1099/13500872-141-2-261.
8
A Saccharomyces cerevisiae Internet protein resource now available.
Electrophoresis. 1995 Jul;16(7):1170-4. doi: 10.1002/elps.11501601193.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验