Ilari Andrea, Savino Carmelinda
CNR Institute of Molecular Biology and Pathology (IBPM), Department of Biochemical Sciences, University of Rome, Sapienza,, Roma, Italy.
Methods Mol Biol. 2008;452:63-87. doi: 10.1007/978-1-60327-159-2_3.
X-ray biocrystallography is the most powerful method to obtain a macromolecular structure. The improvement of computational technologies in recent years and the development of new and powerful computer programs together with the enormous increment in the number of protein structures deposited in the Protein Data Bank, render the resolution of new structures easier than in the past. The aim of this chapter is to provide practical procedures useful for solving a new structure. It is impossible to give more than a flavor of what the x-ray crystallographic technique entails in one brief chapter; therefore, this chapter focuses its attention on the Molecular Replacement method. Whenever applicable, this method allows the resolution of macromolecular structures starting from a single data set and a search model downloaded from the PDB, with the aid only of computer work.
X射线生物晶体学是获取大分子结构的最强大方法。近年来计算技术的进步、新的强大计算机程序的开发以及蛋白质数据库中蛋白质结构数量的大幅增加,使得解析新结构比过去更容易。本章的目的是提供有助于解析新结构的实用程序。在短短一章中不可能全面介绍X射线晶体学技术的全部内容;因此,本章重点关注分子置换法。只要适用,该方法仅借助计算机工作,就能从单个数据集和从蛋白质数据库下载的搜索模型出发解析大分子结构。