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根据2H核磁共振数据计算的膜中肽的取向和动力学

Orientation and dynamics of peptides in membranes calculated from 2H-NMR data.

作者信息

Strandberg Erik, Esteban-Martín Santi, Salgado Jesús, Ulrich Anne S

机构信息

Karlsruhe Institute of Technology, Institute for Biological Interfaces, Forschungszentrum Karlsruhe, 76021 Karlsruhe, Germany.

出版信息

Biophys J. 2009 Apr 22;96(8):3223-32. doi: 10.1016/j.bpj.2009.02.040.

Abstract

Solid-state (2)H-NMR is routinely used to determine the alignment of membrane-bound peptides. Here we demonstrate that it can also provide a quantitative measure of the fluctuations around the distinct molecular axes. Using several dynamic models with increasing complexity, we reanalyzed published (2)H-NMR data on two representative alpha-helical peptides: 1), the amphiphilic antimicrobial peptide PGLa, which permeabilizes membranes by going from a monomeric surface-bound to a dimeric tilted state and finally inserting as an oligomeric pore; and 2), the hydrophobic WALP23, which is a typical transmembrane segment, although previous analysis had yielded helix tilt angles much smaller than expected from hydrophobic mismatch and molecular dynamics simulations. Their (2)H-NMR data were deconvoluted in terms of the two main helix orientation angles (representing the time-averaged peptide tilt and azimuthal rotation), as well as the amplitudes of fluctuation about the corresponding molecular axes (providing the dynamic picture). The mobility of PGLa is found to be moderate and to correlate well with the respective oligomeric states. WALP23 fluctuates more vigorously, now in better agreement with the molecular dynamics simulations and mismatch predictions. The analysis demonstrates that when (2)H-NMR data are fitted to extract peptide orientation angles, an explicit representation of the peptide rigid-body angular fluctuations should be included.

摘要

固态(2)H-NMR常用于确定膜结合肽的取向。在此我们证明,它还能提供围绕不同分子轴波动的定量测量。使用几个复杂程度不断增加的动力学模型,我们重新分析了已发表的关于两种代表性α-螺旋肽的(2)H-NMR数据:1)两亲性抗菌肽PGLa,它通过从单体表面结合态转变为二聚体倾斜态并最终以寡聚孔的形式插入来使膜通透;2)疏水性WALP23,它是典型的跨膜片段,尽管先前的分析得出的螺旋倾斜角比疏水不匹配和分子动力学模拟预期的要小得多。它们的(2)H-NMR数据根据两个主要的螺旋取向角(代表时间平均的肽倾斜和方位旋转)以及围绕相应分子轴的波动幅度(提供动力学图像)进行解卷积。发现PGLa的流动性适中,并且与各自的寡聚状态有很好的相关性。WALP23波动更剧烈,现在与分子动力学模拟和不匹配预测更一致。分析表明,当拟合(2)H-NMR数据以提取肽取向角时,应包括肽刚体角波动的明确表示。

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