Suppr超能文献

一种极端嗜热菌,嗜热栖热菌,是一种多倍体细菌。

An extreme thermophile, Thermus thermophilus, is a polyploid bacterium.

机构信息

Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.

出版信息

J Bacteriol. 2010 Oct;192(20):5499-505. doi: 10.1128/JB.00662-10. Epub 2010 Aug 20.

Abstract

An extremely thermophilic bacterium, Thermus thermophilus HB8, is one of the model organisms for systems biology. Its genome consists of a chromosome (1.85 Mb), a megaplasmid (0.26 Mb) designated pTT27, and a plasmid (9.3 kb) designated pTT8, and the complete sequence is available. We show here that T. thermophilus is a polyploid organism, harboring multiple genomic copies in a cell. In the case of the HB8 strain, the copy number of the chromosome was estimated to be four or five, and the copy number of the pTT27 megaplasmid seemed to be equal to that of the chromosome. It has never been discussed whether T. thermophilus is haploid or polyploid. However, the finding that it is polyploid is not surprising, as Deinococcus radiodurans, an extremely radioresistant bacterium closely related to Thermus, is well known to be a polyploid organism. As is the case for D. radiodurans in the radiation environment, the polyploidy of T. thermophilus might allow for genomic DNA protection, maintenance, and repair at elevated growth temperatures. Polyploidy often complicates the recognition of an essential gene in T. thermophilus as a model organism for systems biology.

摘要

一种极端嗜热细菌,嗜热栖热菌 HB8,是系统生物学的模式生物之一。其基因组由一个染色体(1.85 Mb)、一个巨型质粒(0.26 Mb,命名为 pTT27)和一个质粒(9.3 kb,命名为 pTT8)组成,其完整序列已经公布。我们在这里表明,嗜热栖热菌是一个多倍体生物,在一个细胞中含有多个基因组拷贝。在 HB8 菌株的情况下,染色体的拷贝数估计为四到五个,而 pTT27 巨型质粒的拷贝数似乎与染色体相等。虽然还没有讨论过嗜热栖热菌是单倍体还是多倍体,但它是多倍体这一发现并不奇怪,因为与嗜热栖热菌密切相关的极端耐辐射菌 Deinococcus radiodurans 就是众所周知的多倍体生物。正如耐辐射菌在辐射环境中一样,嗜热栖热菌的多倍体可能允许在升高的生长温度下保护、维持和修复基因组 DNA。多倍体通常会使嗜热栖热菌作为系统生物学的模式生物中的必需基因的识别变得复杂。

相似文献

1
An extreme thermophile, Thermus thermophilus, is a polyploid bacterium.
J Bacteriol. 2010 Oct;192(20):5499-505. doi: 10.1128/JB.00662-10. Epub 2010 Aug 20.
2
The genome sequence of the extreme thermophile Thermus thermophilus.
Nat Biotechnol. 2004 May;22(5):547-53. doi: 10.1038/nbt956. Epub 2004 Apr 4.
4
Characterization of chromosomal and megaplasmid partitioning loci in Thermus thermophilus HB27.
BMC Genomics. 2015 Apr 18;16(1):317. doi: 10.1186/s12864-015-1523-3.
5
The third plasmid pVV8 from Thermus thermophilus HB8: isolation, characterization, and sequence determination.
Extremophiles. 2012 Mar;16(2):237-44. doi: 10.1007/s00792-011-0424-x. Epub 2012 Jan 3.
8
Comparative genomics of Thermus thermophilus: Plasticity of the megaplasmid and its contribution to a thermophilic lifestyle.
J Biotechnol. 2006 Aug 5;124(4):654-61. doi: 10.1016/j.jbiotec.2006.03.043. Epub 2006 May 19.
9
Engineering the genome of Thermus thermophilus using a counterselectable marker.
J Bacteriol. 2015 Mar;197(6):1135-44. doi: 10.1128/JB.02384-14. Epub 2015 Jan 20.
10
Random Chromosome Partitioning in the Polyploid Bacterium HB27.
G3 (Bethesda). 2019 Apr 9;9(4):1249-1261. doi: 10.1534/g3.119.400086.

引用本文的文献

1
Crystal structure of 4-amino-5-hydroxymethyl-2-methyl pyrimidine phosphate kinase (HMPP kinase) from Thermus thermophilus HB8.
Eur Biophys J. 2025 Jul;54(5):247-256. doi: 10.1007/s00249-025-01760-0. Epub 2025 Jun 8.
3
Complete genome sequences of strains isolated from Shirahama Hot Spring in Japan.
Microbiol Resour Announc. 2024 Aug 13;13(8):e0031624. doi: 10.1128/mra.00316-24. Epub 2024 Jul 11.
4
High-efficiency genome editing of an extreme thermophile using endogenous type I and type III CRISPR-Cas systems.
mLife. 2022 Dec 7;1(4):412-427. doi: 10.1002/mlf2.12045. eCollection 2022 Dec.
8
Deletion of the primase-polymerases encoding gene, located in a mobile element in HB27, leads to loss of function mutation of genes.
Front Microbiol. 2022 Dec 1;13:1005862. doi: 10.3389/fmicb.2022.1005862. eCollection 2022.
9
Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea.
World J Microbiol Biotechnol. 2022 Jun 13;38(8):135. doi: 10.1007/s11274-022-03327-z.
10
Extreme Polyploidy of , an Organelle-Like Bacterium with a Drastically Reduced Genome.
Microbiol Spectr. 2022 Jun 29;10(3):e0035022. doi: 10.1128/spectrum.00350-22. Epub 2022 Apr 18.

本文引用的文献

1
The MG1363 and IL1403 laboratory strains of Lactococcus lactis and several dairy strains are diploid.
J Bacteriol. 2010 Feb;192(4):1058-65. doi: 10.1128/JB.00900-09. Epub 2009 Dec 18.
2
Analysis of the recJ gene and protein from Deinococcus radiodurans.
DNA Repair (Amst). 2010 Jan 2;9(1):66-75. doi: 10.1016/j.dnarep.2009.10.009. Epub 2009 Nov 26.
3
Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans.
Cell. 2009 Mar 20;136(6):1044-55. doi: 10.1016/j.cell.2009.01.018.
5
Thermus thermophilus as biological model.
Extremophiles. 2009 Mar;13(2):213-31. doi: 10.1007/s00792-009-0226-6. Epub 2009 Jan 21.
6
Blattabacteria, the endosymbionts of cockroaches, have small genome sizes and high genome copy numbers.
Environ Microbiol. 2008 Dec;10(12):3417-22. doi: 10.1111/j.1462-2920.2008.01776.x.
8
Bottom-up genome assembly using the Bacillus subtilis genome vector.
Nat Methods. 2008 Jan;5(1):41-3. doi: 10.1038/nmeth1143. Epub 2007 Dec 9.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验