Department of Environmental Microbiology, Babasaheb Bhimrao Ambedkar University, Lucknow, 226025, India.
Department of Biological Sciences and Engineering, Netaji Subhas University of Technology, Dwarka, New Delhi, 110078, India.
World J Microbiol Biotechnol. 2022 Jun 13;38(8):135. doi: 10.1007/s11274-022-03327-z.
Thermophiles and hyperthermophiles are immensely useful in understanding the evolution of life, besides their utility in environmental and industrial biotechnology. Advancements in sequencing technologies have revolutionized the field of microbial genomics. The massive generation of data enhances the sequencing coverage multi-fold and allows to analyse the entire genomic features of microbes efficiently and accurately. The mandate of a pure isolate can also be bypassed where whole metagenome-assembled genomes and single cell-based sequencing have fulfilled the majority of the criteria to decode various attributes of microbial genomes. A boom has, therefore, been seen in analysing the extremophilic bacteria and archaea using sequence-based approaches. Due to extensive sequence analysis, it becomes easier to understand the gene flow and their evolution among the members of bacteria and archaea. For instance, sequencing unveiled that Thermotoga maritima shares around 24% of genes of archaeal origin. Comparative and functional genomics provide an analytical view to understanding the microbial diversity of thermophilic bacteria and archaea, their interactions with other microbes, their adaptations, gene flow, and evolution over time. In this review, the genomic features of thermophilic bacteria and archaea are dealt with comprehensively.
嗜热菌和超嗜热菌在理解生命进化方面非常有用,除了在环境和工业生物技术方面的应用。测序技术的进步彻底改变了微生物基因组学领域。大量数据的产生使测序覆盖率提高了多倍,并能够高效、准确地分析微生物的整个基因组特征。在不需要纯培养物的情况下,通过全基因组组装和单细胞测序也可以满足大多数解码微生物基因组各种属性的标准。因此,利用基于序列的方法分析极端嗜热细菌和古菌的数量呈爆炸式增长。由于广泛的序列分析,更容易理解细菌和古菌成员之间的基因流动及其进化。例如,测序结果表明,海栖热袍菌(Thermotoga maritima)有约 24%的古菌来源基因。比较和功能基因组学为理解嗜热细菌和古菌的微生物多样性、它们与其他微生物的相互作用、它们的适应、基因流动以及随时间的进化提供了分析视角。在这篇综述中,全面介绍了嗜热细菌和古菌的基因组特征。