一株野鹭源新城疫病毒的全基因组序列分析。
Complete genome sequence analysis of a Newcastle disease virus isolated from a wild egret.
机构信息
Guangxi Key Laboratory of Animal Vaccines and Diagnostics, Guangxi Veterinary Research Institute, Nanning, Guangxi Province, China.
出版信息
J Virol. 2012 Dec;86(24):13854-5. doi: 10.1128/JVI.02669-12.
Abstract
We report here the complete genomic sequence of a novel Newcastle disease virus (NDV) strain, egret/China/Guangxi/2011, isolated from an egret in Guangxi Province, southern China. A phylogenetic analysis based on a fusion gene comparison with different NDV strains revealed that egret/China/Guangxi/2011 was phylogenetically close to genotype VIIa NDV, and the deduced amino acid sequence was (112)R-R-R-K-R-F(117) at the fusion protein cleavage site. The whole nucleotide sequence had the highest homology (93.3%) with the sequence of strain chicken/Sukorejo/019/10 (GenBank accession number HQ697255). This study will help us to understand the epidemiology and molecular characteristics of Newcastle disease virus in a migratory egret.
摘要
我们在此报告一株新型新城疫病毒（NDV）株——白鹭/中国/广西/2011 的完整基因组序列，该病毒株从中国南方广西省的一只白鹭中分离得到。基于融合基因与不同 NDV 株比较的系统进化分析表明，白鹭/中国/广西/2011 株与基因型 VIIa NDV 亲缘关系较近，其融合蛋白裂解位点的推导氨基酸序列为（112）R-R-R-K-R-F（117）。整个核苷酸序列与毒株 chicken/Sukorejo/019/10（GenBank 登录号：HQ697255）的同源性最高（93.3%）。本研究将有助于我们了解迁徙白鹭中新城疫病毒的流行病学和分子特征。
相似文献
1
Complete genome sequence analysis of a Newcastle disease virus isolated from a wild egret.
J Virol. 2012 Dec;86(24):13854-5. doi: 10.1128/JVI.02669-12.
2
Identification of a Genotype IX Newcastle Disease Virus in a Guangxi White Duck.
Genome Announc. 2013 Oct 10;1(5):e00836-13. doi: 10.1128/genomeA.00836-13.
3
Characterization of genotype IX Newcastle disease virus strains isolated from wild birds in the northern Qinling Mountains, China.
Virus Genes. 2014 Feb;48(1):48-55. doi: 10.1007/s11262-013-0987-y. Epub 2013 Oct 2.
4
Molecular and phylogenetic characterization based on the complete genome of a virulent pathotype of Newcastle disease virus isolated in the 1970s in Brazil.
Infect Genet Evol. 2014 Aug;26:160-7. doi: 10.1016/j.meegid.2014.05.014. Epub 2014 May 24.
5
Re-emergence of a genotype VIII virulent Newcastle disease virus isolated from Chinese game fowl after 13 years.
Transbound Emerg Dis. 2019 Mar;66(2):1077-1084. doi: 10.1111/tbed.13129. Epub 2019 Feb 5.
6
Characterization of Newcastle disease virus isolates by reverse transcription PCR coupled to direct nucleotide sequencing and development of sequence database for pathotype prediction and molecular epidemiological analysis.
J Clin Microbiol. 1995 Oct;33(10):2624-30. doi: 10.1128/jcm.33.10.2624-2630.1995.
7
Genomic characterisation of a lentogenic Newcastle disease virus strain HX01 isolated from sick pigs in China.
Virus Genes. 2013 Apr;46(2):264-70. doi: 10.1007/s11262-012-0844-4. Epub 2012 Nov 10.
8
Genomic characterisation of two virulent Newcastle disease viruses isolated from crested ibis (Nipponia nippon) in China.
Gene. 2014 Dec 15;553(2):84-9. doi: 10.1016/j.gene.2014.09.059. Epub 2014 Oct 1.
9
Molecular characterization of Newcastle disease virus strains isolated from different outbreaks in Northeast India during 2014-15.
Microb Pathog. 2016 Feb;91:85-91. doi: 10.1016/j.micpath.2015.11.026. Epub 2015 Nov 30.
10
[Molecular genetic characteristics of the newcastle disease virus velogenic strains isolated in Russia, Ukraine, Kazakhstan, and Kirghizia].
Vopr Virusol. 2010 Jul-Aug;55(4):29-32.
引用本文的文献
1
Simultaneous Expression of Chicken Granulocyte Monocyte Colony-Stimulating Factor and the Hemagglutinin-Neuraminidase Epitope of the Virulent Newcastle Disease Virus Genotype VII C22 Strain in a Functional Synthetic Recombinant Adenovirus as a Genotype-Matched Vaccine with Potential Antiviral Activity.
Microbiol Spectr. 2023 Jun 15;11(3):e0402422. doi: 10.1128/spectrum.04024-22. Epub 2023 Apr 10.
2
Molecular characterization of new emerging sub-genotype VIIh Newcastle disease viruses in China.
Virus Genes. 2019 Jun;55(3):314-321. doi: 10.1007/s11262-019-01651-5. Epub 2019 Mar 5.
3
Adaptation of Newcastle Disease Virus (NDV) in Feral Birds and their Potential Role in Interspecies Transmission.
Open Virol J. 2018 Aug 31;12:52-68. doi: 10.2174/1874357901812010052. eCollection 2018.
4
Genetic and pathogenic characterisation of 11 avian reovirus isolates from northern China suggests continued evolution of virulence.
Sci Rep. 2016 Oct 18;6:35271. doi: 10.1038/srep35271.
5
Characterisation of genotype VII Newcastle disease virus (NDV) isolated from NDV vaccinated chickens, and the efficacy of LaSota and recombinant genotype VII vaccines against challenge with velogenic NDV.
J Vet Sci. 2015;16(4):447-57. doi: 10.4142/jvs.2015.16.4.447.
6
Newcastle disease virus: current status and our understanding.
Virus Res. 2014 May 12;184:71-81. doi: 10.1016/j.virusres.2014.02.016. Epub 2014 Mar 1.
7
Identification of a Genotype IX Newcastle Disease Virus in a Guangxi White Duck.
Genome Announc. 2013 Oct 10;1(5):e00836-13. doi: 10.1128/genomeA.00836-13.
本文引用的文献
1
Newcastle disease: evolution of genotypes and the related diagnostic challenges.
Infect Genet Evol. 2010 Jan;10(1):26-35. doi: 10.1016/j.meegid.2009.09.012. Epub 2009 Sep 30.
2
Role of intergenic sequences in newcastle disease virus RNA transcription and pathogenesis.
J Virol. 2008 Feb;82(3):1323-31. doi: 10.1128/JVI.01989-07. Epub 2007 Nov 21.
3
Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications.
Virus Res. 2006 Sep;120(1-2):36-48. doi: 10.1016/j.virusres.2005.11.009.
4
Ultrastructural changes of the tracheal epithelium after vaccination of day-old chickens with the La Sota strain of Newcastle disease virus.
Vet Pathol. 2005 Sep;42(5):559-65. doi: 10.1354/vp.42-5-559.
5
Virulence of Newcastle disease virus is determined by the cleavage site of the fusion protein and by both the stem region and globular head of the haemagglutinin-neuraminidase protein.
J Gen Virol. 2005 Jun;86(Pt 6):1759-1769. doi: 10.1099/vir.0.80822-0.
6
Role of fusion protein cleavage site in the virulence of Newcastle disease virus.
Microb Pathog. 2004 Jan;36(1):1-10. doi: 10.1016/j.micpath.2003.07.003.
7
Newcastle disease and other avian paramyxoviruses.
Rev Sci Tech. 2000 Aug;19(2):443-62. doi: 10.20506/rst.19.2.1231.
Zotero 插件