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基于线粒体DNA分析的鲫属复合体中银鲫的系统发育关系

[Phylogenetic relationships of silver crucian carp in Carassius auratus complex based on mtDNA analysis].

作者信息

Podlesnykh A V, Apalikova O V, Brykov V A

出版信息

Genetika. 2012 Dec;48(12):1389-400.

Abstract

The phylogenetic relationships of Carassius genus subspecies were investigated based on the data of the variability of nucleotide sequences of the mtDNA cytochrome b (cyt b) and control region (CR). Dendrograms constructed based on the BA, ML, NJ, and MP methods revealed five clusters of the congruent topologies that substantially corresponded to geographical localities and taxonomic conception of the C. auratus complex. An analysis of two mtDNA fragment topologies demonstrated that the island forms of Japanese crucian carps C. cuvieri and C. auratus langsdorfii diverged later compared to the divergence of continental C. auratus forms (4.0-4.5 mln years ago, by molecular calibration). Among the continental silver crucian carps, C. a. gibelio forms two clusters corresponding to two phylogroups with a mean uncorrected genetic distance p = 0.044. The genealogical combination of haplotypes with the first C. a. gibelio phylogroup was observed in C. auratus clade. According to the data of mtDNA analysis, these subspecies represent sister lineages with a level of intergroup divergence of p = 0.022-0.036. No genetic differences were observed between diploid (except for the two C. a. gibelio phylogroups) and polyploid C a. auratus, as well as monophyly in polyploid forms. New approaches based on a comparative study of the nuclear markers might help to unravel the origin of gynogenetic forms and phylogenetic relationships within the C. auratus complex.

摘要

基于线粒体DNA细胞色素b(cyt b)和控制区(CR)核苷酸序列变异性的数据,对鲫属亚种的系统发育关系进行了研究。基于贝叶斯分析(BA)、最大似然法(ML)、邻接法(NJ)和最大简约法(MP)构建的系统发育树揭示了五个具有一致拓扑结构的聚类,这些聚类与鲫复合体的地理分布和分类概念基本相符。对两个线粒体DNA片段拓扑结构的分析表明,日本鲫鱼的岛屿型(黑鲫和兰氏鲫)与大陆型鲫的分化时间较晚(通过分子校准,在400 - 450万年前)。在大陆银鲫中,银鲫形成了两个对应于两个系统发育组的聚类,平均未校正遗传距离p = 0.044。在鲫类群中观察到了单倍型与银鲫第一个系统发育组的谱系组合。根据线粒体DNA分析数据,这些亚种代表了姐妹谱系,组间分化水平为p = 0.022 - 0.036。在二倍体(除了银鲫的两个系统发育组)和多倍体鲫之间未观察到遗传差异,并且多倍体形式具有单系性。基于核标记比较研究的新方法可能有助于揭示雌核发育形式的起源以及鲫复合体内部的系统发育关系。

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