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使用基于多尺度智能体的建模方法模拟癌症生长。

Simulating cancer growth with multiscale agent-based modeling.

作者信息

Wang Zhihui, Butner Joseph D, Kerketta Romica, Cristini Vittorio, Deisboeck Thomas S

机构信息

Department of Pathology, University of New Mexico, Albuquerque, NM 87131, USA.

Department of Chemical Engineering and Center for Biomedical Engineering, University of New Mexico, Albuquerque, NM 87131, USA.

出版信息

Semin Cancer Biol. 2015 Feb;30:70-8. doi: 10.1016/j.semcancer.2014.04.001. Epub 2014 May 2.

Abstract

There have been many techniques developed in recent years to in silico model a variety of cancer behaviors. Agent-based modeling is a specific discrete-based hybrid modeling approach that allows simulating the role of diversity in cell populations as well as within each individual cell; it has therefore become a powerful modeling method widely used by computational cancer researchers. Many aspects of tumor morphology including phenotype-changing mutations, the adaptation to microenvironment, the process of angiogenesis, the influence of extracellular matrix, reactions to chemotherapy or surgical intervention, the effects of oxygen and nutrient availability, and metastasis and invasion of healthy tissues have been incorporated and investigated in agent-based models. In this review, we introduce some of the most recent agent-based models that have provided insight into the understanding of cancer growth and invasion, spanning multiple biological scales in time and space, and we further describe several experimentally testable hypotheses generated by those models. We also discuss some of the current challenges of multiscale agent-based cancer models.

摘要

近年来已经开发出许多技术来在计算机上模拟各种癌症行为。基于主体的建模是一种特定的基于离散的混合建模方法,它允许模拟细胞群体以及每个个体细胞内多样性的作用;因此,它已成为计算癌症研究人员广泛使用的一种强大的建模方法。肿瘤形态的许多方面,包括改变表型的突变、对微环境的适应、血管生成过程、细胞外基质的影响、对化疗或手术干预的反应、氧气和营养物质可用性的影响以及对健康组织的转移和侵袭,都已被纳入基于主体的模型并进行了研究。在这篇综述中,我们介绍了一些最新的基于主体的模型,这些模型为理解癌症生长和侵袭提供了见解,跨越了时间和空间的多个生物尺度,并且我们进一步描述了由这些模型产生的几个可通过实验检验的假设。我们还讨论了基于主体的多尺度癌症模型当前面临的一些挑战。

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