Suppr超能文献

对新发现的表观遗传信息标记和读取器的见解。

Insights into newly discovered marks and readers of epigenetic information.

作者信息

Andrews Forest H, Strahl Brian D, Kutateladze Tatiana G

机构信息

Department of Pharmacology, University of Colorado School of Medicine, Aurora, Colorado, USA.

Department of Biochemistry and Biophysics, the University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA.

出版信息

Nat Chem Biol. 2016 Aug 18;12(9):662-8. doi: 10.1038/nchembio.2149.

Abstract

The field of chromatin biology has been advancing at an accelerated pace. Recent discoveries of previously uncharacterized sites and types of post-translational modifications (PTMs) and the identification of new sets of proteins responsible for the deposition, removal, and reading of these marks continue raising the complexity of an already exceedingly complicated biological phenomenon. In this Perspective article we examine the biological importance of new types and sites of histone PTMs and summarize the molecular mechanisms of chromatin engagement by newly discovered epigenetic readers. We also highlight the imperative role of structural insights in understanding PTM-reader interactions and discuss future directions to enhance the knowledge of PTM readout.

摘要

染色质生物学领域一直在加速发展。最近对以前未被表征的翻译后修饰(PTM)位点和类型的发现,以及对负责这些标记的沉积、去除和识别的新蛋白质组的鉴定,不断增加着这一原本就极其复杂的生物学现象的复杂性。在这篇观点文章中,我们研究了组蛋白PTM新类型和位点的生物学重要性,并总结了新发现的表观遗传识别蛋白与染色质相互作用的分子机制。我们还强调了结构见解在理解PTM-识别蛋白相互作用中的关键作用,并讨论了增强对PTM读出认识的未来方向。

相似文献

1
Insights into newly discovered marks and readers of epigenetic information.
Nat Chem Biol. 2016 Aug 18;12(9):662-8. doi: 10.1038/nchembio.2149.
2
Regulation of Methyllysine Readers through Phosphorylation.
ACS Chem Biol. 2016 Mar 18;11(3):547-53. doi: 10.1021/acschembio.5b00802. Epub 2016 Jan 6.
3
Histone peptide microarray screen of chromo and Tudor domains defines new histone lysine methylation interactions.
Epigenetics Chromatin. 2017 Mar 14;10:12. doi: 10.1186/s13072-017-0117-5. eCollection 2017.
4
Readout of epigenetic modifications.
Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
5
How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.
Nat Struct Mol Biol. 2007 Nov;14(11):1025-1040. doi: 10.1038/nsmb1338. Epub 2007 Nov 5.
6
Engineered Reader Proteins for Enhanced Detection of Methylated Lysine on Histones.
ACS Chem Biol. 2020 Jan 17;15(1):103-111. doi: 10.1021/acschembio.9b00651. Epub 2019 Nov 1.
7
Photo-lysine captures proteins that bind lysine post-translational modifications.
Nat Chem Biol. 2016 Feb;12(2):70-2. doi: 10.1038/nchembio.1990. Epub 2015 Dec 21.
8
Identification of protein lysine methylation readers with a yeast three-hybrid approach.
Epigenetics Chromatin. 2018 Jan 25;11(1):4. doi: 10.1186/s13072-018-0175-3.
9
Identification of a small-molecule ligand of the epigenetic reader protein Spindlin1 via a versatile screening platform.
Nucleic Acids Res. 2016 May 19;44(9):e88. doi: 10.1093/nar/gkw089. Epub 2016 Feb 17.
10
A Peptidomimetic Ligand Targeting the Chromodomain of MPP8 Reveals HRP2's Association with the HUSH Complex.
ACS Chem Biol. 2021 Sep 17;16(9):1721-1736. doi: 10.1021/acschembio.1c00429. Epub 2021 Aug 20.

引用本文的文献

1
Histone acetylation readers Bdf1 and Yaf9 direct SWR1 remodeler to +1 nucleosome.
Sci Adv. 2025 Aug 8;11(32):eadt2002. doi: 10.1126/sciadv.adt2002. Epub 2025 Aug 6.
2
Development of Chemical Tools for the Human YEATS Domain.
ACS Chem Biol. 2025 Aug 15;20(8):1828-1840. doi: 10.1021/acschembio.5c00349. Epub 2025 Jul 11.
3
The YEATS domain is a selective reader of histone methacrylation.
Structure. 2025 Jul 3;33(7):1233-1239.e5. doi: 10.1016/j.str.2025.04.010. Epub 2025 May 7.
4
Epigenetic reader chromodomain as a potential therapeutic target.
RSC Chem Biol. 2025 Apr 11. doi: 10.1039/d4cb00324a.
5
The emerging role of protein L-lactylation in metabolic regulation and cell signalling.
Nat Metab. 2025 Apr;7(4):647-664. doi: 10.1038/s42255-025-01259-0. Epub 2025 Apr 2.
6
Structure-function relationship of ASH1L and histone H3K36 and H3K4 methylation.
Nat Commun. 2025 Mar 6;16(1):2235. doi: 10.1038/s41467-025-57556-5.
7
DPF2 reads histone lactylation to drive transcription and tumorigenesis.
Proc Natl Acad Sci U S A. 2024 Dec 10;121(50):e2421496121. doi: 10.1073/pnas.2421496121. Epub 2024 Dec 5.
8
The TRIM33 Bromodomain Recognizes Histone Lysine Lactylation.
ACS Chem Biol. 2024 Dec 20;19(12):2418-2428. doi: 10.1021/acschembio.4c00248. Epub 2024 Nov 18.
9
Dysregulation of epigenetic modifications in inborn errors of immunity.
Epigenomics. 2024;16(19-20):1301-1313. doi: 10.1080/17501911.2024.2410695. Epub 2024 Oct 15.

本文引用的文献

1
Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain.
Mol Cell. 2016 Apr 21;62(2):181-193. doi: 10.1016/j.molcel.2016.03.028.
2
YEATS2 is a selective histone crotonylation reader.
Cell Res. 2016 May;26(5):629-32. doi: 10.1038/cr.2016.49. Epub 2016 Apr 22.
3
The Taf14 YEATS domain is a reader of histone crotonylation.
Nat Chem Biol. 2016 Jun;12(6):396-8. doi: 10.1038/nchembio.2065. Epub 2016 Apr 18.
4
Chromatin condensation and recruitment of PHD finger proteins to histone H3K4me3 are mutually exclusive.
Nucleic Acids Res. 2016 Jul 27;44(13):6102-12. doi: 10.1093/nar/gkw193. Epub 2016 Mar 25.
5
The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation.
Transcription. 2016;7(1):14-20. doi: 10.1080/21541264.2015.1125987.
6
Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette.
Structure. 2016 Mar 1;24(3):486-94. doi: 10.1016/j.str.2016.01.004. Epub 2016 Feb 11.
7
Regulation of Methyllysine Readers through Phosphorylation.
ACS Chem Biol. 2016 Mar 18;11(3):547-53. doi: 10.1021/acschembio.5b00802. Epub 2016 Jan 6.
8
Bivalent interaction of the PZP domain of BRPF1 with the nucleosome impacts chromatin dynamics and acetylation.
Nucleic Acids Res. 2016 Jan 8;44(1):472-84. doi: 10.1093/nar/gkv1321. Epub 2015 Nov 30.
9
The PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79.
Mol Cell. 2015 Oct 15;60(2):319-27. doi: 10.1016/j.molcel.2015.08.019. Epub 2015 Oct 1.
10
A Subset of Human Bromodomains Recognizes Butyryllysine and Crotonyllysine Histone Peptide Modifications.
Structure. 2015 Oct 6;23(10):1801-1814. doi: 10.1016/j.str.2015.08.004. Epub 2015 Sep 10.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验