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N-甲基腺苷甲基化组的全转录组图谱绘制

Transcriptome-Wide Mapping of N -Methyladenosine Methylome.

作者信息

Li Xiaoyu, Peng Jinying, Yi Chengqi

机构信息

State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, 100871, China.

Department of Chemical Biology, Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China.

出版信息

Methods Mol Biol. 2017;1562:245-255. doi: 10.1007/978-1-4939-6807-7_16.

Abstract

N -Methyladenosine (mA) is a prevalent posttranscriptional RNA modification and commonly found in tRNA and rRNA. Very recent works have also demonstrated the prevalence of mA in mammalian mRNA. Hence, high-throughput methods that allow transcriptome-wide mapping of mA will be important for further functional investigations. Here, we describe a technique called "mA-ID-Seq", which is based on mA immunoprecipitation and the inherent ability of mA to stall reverse transcription, to map mA in the transcriptome. Utilizing this technique, highly confident mA peaks can be obtained on a transcriptome-wide level.

摘要

N-甲基腺苷(mA)是一种普遍存在的转录后RNA修饰,常见于转运RNA(tRNA)和核糖体RNA(rRNA)中。最近的研究还表明,mA在哺乳动物信使RNA(mRNA)中也很普遍。因此,能够在全转录组范围内对mA进行定位的高通量方法对于进一步的功能研究至关重要。在此,我们描述了一种名为“mA-ID-Seq”的技术,该技术基于mA免疫沉淀以及mA使逆转录停滞的内在能力,用于在转录组中定位mA。利用该技术,可以在全转录组水平上获得高度可靠的mA峰。

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