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从 EMBL-EBI 获取生物信息学工具的编程访问:2017 年更新。

Programmatic access to bioinformatics tools from EMBL-EBI update: 2017.

机构信息

European Bioinformatics Institute, EMBL Outstation, Wellcome Trust Genome Campus, Hinxton, CB10 1SD Cambridge, UK.

出版信息

Nucleic Acids Res. 2017 Jul 3;45(W1):W550-W553. doi: 10.1093/nar/gkx273.

Abstract

Since 2009 the EMBL-EBI provides free and unrestricted access to several bioinformatics tools via the user's browser as well as programmatically via Web Services APIs. Programmatic access to these tools, which is fundamental to bioinformatics, is increasingly important as more high-throughput data is generated, e.g. from proteomics and metagenomic experiments. Access is available using both the SOAP and RESTful approaches and their usage is reviewed regularly in order to ensure that the best, supported tools are available to all users. We present here an update describing the latest enhancement to the Job Dispatcher APIs as well as the governance under it.

摘要

自 2009 年以来,EMBL-EBI 通过用户的浏览器以及通过 Web 服务 API 以编程方式免费提供对多个生物信息学工具的无限制访问。对这些工具的编程访问对于生物信息学至关重要,因为越来越多的高通量数据(例如来自蛋白质组学和宏基因组学实验的数据)正在生成。可以使用 SOAP 和 RESTful 方法进行访问,并且定期审查其使用情况,以确保所有用户都可以使用最好的、受支持的工具。在这里,我们介绍了最新的作业调度程序 API 增强功能以及其治理情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb4b/5570243/5d6536de7bc7/gkx273fig1.jpg

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