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基于生物信息学分析鉴定 COL4A1 为胃癌曲妥珠单抗耐药的潜在基因。

Identification of COL4A1 as a potential gene conferring trastuzumab resistance in gastric cancer based on bioinformatics analysis.

机构信息

Department of Heart Failure, Research Center for Translational Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200120, P.R. China.

Department of Pharmacy, No. 210 Hospital of PLA, Dalian, Liaoning 116000, P.R. China.

出版信息

Mol Med Rep. 2018 May;17(5):6387-6396. doi: 10.3892/mmr.2018.8664. Epub 2018 Mar 1.

Abstract

Trastuzumab, the first targeted antibody against human epidermal growth factor receptor 2 (HER2), has been used to treat gastric cancer patients with HER2 overexpression. However, trastuzumab resistance often occurs following an initial period of benefits, and the underlying mechanisms remain largely unclear. The present study revealed that collagen type IV α1 chain (COL4A1), whose expression is upregulated in gastric cancer tissues and trastuzumab‑resistant gastric cancer cells, may potentially confer trastuzumab resistance in gastric cancer. By performing bioinformatics analysis of 2 microarray datasets, the present study initially identified COL4A1, overexpressed in gastric cancer tissues and trastuzumab‑resistant gastric cancer cells, as a potential candidate for inducing trastuzumab resistance. The drug resistance function of COL4A1 in gastric cancer was then validated by performing protein/gene interactions and biological process annotation analyses, and further validated by analyzing the functionality of microRNAs that target COL4A1 mRNA. Collectively, these data indicated that COL4A1 may confer trastuzumab resistance in gastric cancer.

摘要

曲妥珠单抗是首个针对人表皮生长因子受体 2(HER2)的靶向抗体,已被用于治疗 HER2 过表达的胃癌患者。然而,曲妥珠单抗耐药常常在最初获益后发生,其潜在机制仍在很大程度上不清楚。本研究表明,在胃癌组织和曲妥珠单抗耐药的胃癌细胞中表达上调的Ⅳ型胶原α1 链(COL4A1),可能使胃癌获得曲妥珠单抗耐药性。通过对 2 个微阵列数据集进行生物信息学分析,本研究初步鉴定出 COL4A1 是一种潜在的候选物,它在胃癌组织和曲妥珠单抗耐药的胃癌细胞中过表达,可诱导曲妥珠单抗耐药。通过进行蛋白/基因相互作用和生物学过程注释分析,验证了 COL4A1 在胃癌中的耐药功能,并进一步通过分析靶向 COL4A1 mRNA 的 microRNA 的功能进行了验证。综上所述,这些数据表明 COL4A1 可能在胃癌中赋予曲妥珠单抗耐药性。

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